View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_289 (Length: 249)
Name: NF6864A_low_289
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_289 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 28619118 - 28619346
Alignment:
| Q |
15 |
atggacatcagtatggactaaatataaaatggatggggatgatctccttggagaaatgaaaatggtcacctcagtaagagtgcctcctttactgagatag |
114 |
Q |
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| T |
28619118 |
atggaaataagtatggactaaatataaaatggatggagatgatctccttggagaaatgaaaatggtcacctcagtaagagtgcctcctttactgagatag |
28619217 |
T |
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| Q |
115 |
ggataattatacacccagcgaccaaaatttccactatacggatcagataccctttgtgttatgttacactcctctaaatacctcctctttgtctctctgt |
214 |
Q |
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| T |
28619218 |
ggataattatacacccagcgaccaaaatttccactaaacggatcagataccctttgtgttctgttacactcctctaaatacctcctctttgtctctctgt |
28619317 |
T |
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| Q |
215 |
taatgatttcctcacctttctccaattct |
243 |
Q |
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| T |
28619318 |
taatgatttcctcacctttctccaattct |
28619346 |
T |
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