View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_295 (Length: 248)
Name: NF6864A_low_295
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_295 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43802354 - 43802596
Alignment:
| Q |
1 |
atgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattc |
100 |
Q |
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| T |
43802354 |
atgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattc |
43802453 |
T |
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| Q |
101 |
tacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaa |
200 |
Q |
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| T |
43802454 |
tacagtgcatggttatttcataaagaaaaaaacaagaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaa |
43802553 |
T |
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| Q |
201 |
-tttttccagagagattcgtggataaaagtttagactaccgcg |
242 |
Q |
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| T |
43802554 |
ttttttccggagagattcgtggataaaagtttagactaccgcg |
43802596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43812923 - 43813163
Alignment:
| Q |
1 |
atgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattc |
100 |
Q |
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||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||| | ||| | |
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| T |
43812923 |
atgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctgcaggaccacttgtgccgcgcgagtcaacagaggatgc |
43813022 |
T |
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| Q |
101 |
tacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaa |
200 |
Q |
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| T |
43813023 |
tacagttcatggttatttcataaagaaaaaaacaagagtaattgtgaatttgtgggcaataggaagagattctaagatatggtctaataatgccgaagaa |
43813122 |
T |
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| Q |
201 |
tttt-tccagagagattcgtggataaaagtttagactaccg |
240 |
Q |
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| T |
43813123 |
ttttatccagagagatttgtggataaaaacttcgactaccg |
43813163 |
T |
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