View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_297 (Length: 248)

Name: NF6864A_low_297
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_297
NF6864A_low_297
[»] chr4 (1 HSPs)
chr4 (147-235)||(37616789-37616877)
[»] chr3 (2 HSPs)
chr3 (163-235)||(19768426-19768498)
chr3 (147-235)||(29199924-29200010)
[»] chr1 (1 HSPs)
chr1 (147-227)||(51389463-51389543)
[»] chr8 (1 HSPs)
chr8 (147-227)||(770512-770592)
[»] chr7 (1 HSPs)
chr7 (147-184)||(32663150-32663187)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 37616877 - 37616789
Alignment:
Q  147 atcttttctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616877 atcttttctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 37616789  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 19768426 - 19768498
Alignment:
Q  163 actctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768426 actctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 19768498  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 29199924 - 29200010
Alignment:
Q  147 atcttttctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 235  Q
    |||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199924 atctttcctttttattattctc--taacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg 29200010  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 51389543 - 51389463
Alignment:
Q  147 atcttttctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 227  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||  ||||||||||||||||||||| ||||||||| |||||    
T  51389543 atcttttctttttatcactctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct 51389463  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 770512 - 770592
Alignment:
Q  147 atcttttctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 227  Q
    ||||||||||||||| || || ||||| ||||||||||||| | ||||||||||||||||||||| ||||||||| |||||    
T  770512 atcttttctttttatcaccctgtctaaaacttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccct 770592  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 32663150 - 32663187
Alignment:
Q  147 atcttttctttttattactctctctaacacttctttgt 184  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  32663150 atctttcctttttattactctctctaacacttatttgt 32663187  T

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