View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_299 (Length: 248)
Name: NF6864A_low_299
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_299 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 23033655 - 23033823
Alignment:
| Q |
59 |
gcacaaaatgagcaacttggtgtcataaaaatctactcagggctttcttttaaaaaactctttgactgcaatttggattgcaacatcaagattttcgatg |
158 |
Q |
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| T |
23033655 |
gcacaaaatgagcaacttggtgtcataaaaatctactcaaggttttcttttaaaaaactctttgactgcaatttggattgcaacatcaagattttcgatg |
23033754 |
T |
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| Q |
159 |
tcttcgcaatcataattgaggctgcatcagcagcttttgactacgattctctacaatataaaagaccgc |
227 |
Q |
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| T |
23033755 |
tcttcgcaatcataattgaggctgcatcagcagcttttgactaagattctctacaatatcaaagaccgc |
23033823 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 23033608 - 23033641
Alignment:
| Q |
17 |
cagaactgagatttcatttggaaatcacacacat |
50 |
Q |
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| T |
23033608 |
cagaactgagatttcatttgaaaatcacacacat |
23033641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 26433813 - 26433741
Alignment:
| Q |
127 |
caatttggattgcaacatcaagattttcgatgtcttcgcaatcataattgaggctgcatcagcagcttttgac |
199 |
Q |
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| T |
26433813 |
caatttgtattgcaacatctagacttttgatgtcttcacaatcgtaatacaggctgcatcagcaccttttgac |
26433741 |
T |
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