View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_301 (Length: 247)

Name: NF6864A_low_301
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_301
NF6864A_low_301
[»] chr3 (27 HSPs)
chr3 (20-247)||(41985622-41985852)
chr3 (22-247)||(41980848-41981073)
chr3 (139-241)||(9494822-9494924)
chr3 (125-246)||(9343840-9343961)
chr3 (20-241)||(9448314-9448535)
chr3 (125-233)||(9329844-9329952)
chr3 (125-247)||(9407360-9407482)
chr3 (125-233)||(9336548-9336656)
chr3 (128-246)||(9655360-9655478)
chr3 (128-247)||(9425567-9425686)
chr3 (128-246)||(9646367-9646485)
chr3 (125-247)||(9695616-9695738)
chr3 (125-246)||(9617463-9617584)
chr3 (140-233)||(9340679-9340772)
chr3 (125-227)||(9416587-9416689)
chr3 (125-247)||(9397779-9397903)
chr3 (139-229)||(9352913-9353003)
chr3 (140-233)||(9347995-9348088)
chr3 (140-233)||(9369649-9369742)
chr3 (125-246)||(9432891-9433012)
chr3 (133-246)||(9626488-9626601)
chr3 (119-240)||(9756381-9756502)
chr3 (159-227)||(9441815-9441883)
chr3 (181-233)||(9614009-9614061)
chr3 (125-173)||(9686751-9686799)
chr3 (178-237)||(9377090-9377149)
chr3 (211-240)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (20-185)||(13170579-13170744)
chr8 (20-243)||(44688680-44688903)
[»] chr1 (8 HSPs)
chr1 (20-247)||(18991198-18991422)
chr1 (143-246)||(235208-235311)
chr1 (130-246)||(4428626-4428742)
chr1 (174-246)||(4439855-4439927)
chr1 (148-246)||(8814385-8814483)
chr1 (143-246)||(251412-251515)
chr1 (148-233)||(231589-231674)
chr1 (150-246)||(246862-246958)
[»] chr2 (1 HSPs)
chr2 (128-247)||(20694304-20694423)
[»] chr6 (7 HSPs)
chr6 (125-241)||(7041496-7041612)
chr6 (143-247)||(7046833-7046937)
chr6 (143-247)||(7025744-7025854)
chr6 (143-204)||(7029850-7029911)
chr6 (143-204)||(9170854-9170915)
chr6 (143-247)||(7012808-7012918)
chr6 (145-204)||(9159515-9159574)
[»] chr7 (2 HSPs)
chr7 (138-244)||(3695687-3695792)
chr7 (125-233)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (139-246)||(18571103-18571213)
chr5 (143-247)||(33541646-33541750)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 41985852 - 41985622
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatgg 116  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  117 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  217 ttttctgcttctgcttcggatttgtctgttg 247  Q
    |||||||||||||||||||||||||||||||    
T  41985652 ttttctgcttctgcttcggatttgtctgttg 41985622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 41981073 - 41980848
Alignment:
Q  22 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 121  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  122 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 221  Q
    | ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  222 tgcttctgcttcggatttgtctgttg 247  Q
    ||||||||||||  ||||||||||||    
T  41980873 tgcttctgcttcaaatttgtctgttg 41980848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 9494822 - 9494924
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 238  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  239 tgt 241  Q
    |||    
T  9494922 tgt 9494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 9343961 - 9343840
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  225 ttctgcttcggatttgtctgtt 246  Q
    ||||||||||||||||| ||||    
T  9343861 ttctgcttcggatttgtgtgtt 9343840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 9448535 - 9448314
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 119  Q
    ||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| | |    
T  9448535 atggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctat 9448436  T
Q  120 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 219  Q
    || | |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  |||||||||    
T  9448435 aagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttt 9448336  T
Q  220 tctgcttctgcttcggatttgt 241  Q
    ||||||||||||||||||||||    
T  9448335 tctgcttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 9329952 - 9329844
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  225 ttctgcttc 233  Q
    |||||||||    
T  9329852 ttctgcttc 9329844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 9407482 - 9407360
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  225 ttctgcttcggatttgtctgttg 247  Q
    ||| ||||||||||||| |||||    
T  9407382 ttcagcttcggatttgtgtgttg 9407360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 9336656 - 9336548
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  225 ttctgcttc 233  Q
    |||||||||    
T  9336556 ttctgcttc 9336548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 9655360 - 9655478
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  228 tgcttcggatttgtctgtt 246  Q
     ||||||||||||| ||||    
T  9655460 agcttcggatttgtgtgtt 9655478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 9425686 - 9425567
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  228 tgcttcggatttgtctgttg 247  Q
     ||||||||||||| |||||    
T  9425586 agcttcggatttgtgtgttg 9425567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 9646367 - 9646485
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  228 tgcttcggatttgtctgtt 246  Q
     ||||||||||||| ||||    
T  9646467 agcttcggatttgtgtgtt 9646485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 9695616 - 9695738
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  225 ttctgcttcggatttgtctgttg 247  Q
     |||||||| || |||| |||||    
T  9695716 atctgcttcagagttgtgtgttg 9695738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 9617463 - 9617584
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  225 ttctgcttcggatttgtctgtt 246  Q
    ||||||||| ||||||| ||||    
T  9617563 ttctgcttcagatttgtgtgtt 9617584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 233  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 9416689 - 9416587
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  225 ttc 227  Q
    |||    
T  9416589 ttc 9416587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 9397903 - 9397779
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 222  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  223 gcttctgcttcggatttgtctgttg 247  Q
    ||||| |||| |||||||| |||||    
T  9397803 gcttcagctttggatttgtgtgttg 9397779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 9353003 - 9352913
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 229  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| |||||||||||||||||||||||    
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctg 9352913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 9348088 - 9347995
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 233  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9347995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 9369742 - 9369649
Alignment:
Q  140 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 233  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9369649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 9433012 - 9432891
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  225 ttctgcttcggatttgtctgtt 246  Q
    ||| || |||||||||| ||||    
T  9432912 ttcagcctcggatttgtgtgtt 9432891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 9626488 - 9626601
Alignment:
Q  133 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 232  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  233 cggatttgtctgtt 246  Q
    ||||||||| ||||    
T  9626588 cggatttgtgtgtt 9626601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  119 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 218  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  219 ttctgcttctgcttcggatttg 240  Q
     ||||| ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 9441815 - 9441883
Alignment:
Q  159 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| |||||||||||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 9441883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 9614009 - 9614061
Alignment:
Q  181 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 233  Q
    |||||||  ||||| |||||||||| ||||||||| |||||||||||||||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttc 9614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 173  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 9377149 - 9377090
Alignment:
Q  178 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 237  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| ||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggat 9377090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  211 tgttcgttttctgcttctgcttcggatttg 240  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 119  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  120 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 185  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 44688680 - 44688903
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 119  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  120 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 219  Q
    |  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattt 44688879  T
Q  220 tctgcttctgcttcggatttgtct 243  Q
    ||| || |||||||||||||||||    
T  44688880 tctactactgcttcggatttgtct 44688903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 18991422 - 18991198
Alignment:
Q  20 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 119  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  120 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 219  Q
    ||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttt 18991226  T
Q  220 tctgcttctgcttcggatttgtctgttg 247  Q
    |||||||||||||| ||||| |||||||    
T  18991225 tctgcttctgcttctgatttatctgttg 18991198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 235311 - 235208
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||     
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgtg 235212  T
Q  243 tgtt 246  Q
    ||||    
T  235211 tgtt 235208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 4428742 - 4428626
Alignment:
Q  130 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 229  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  230 cttcggatttgtctgtt 246  Q
    |||| || |||||||||    
T  4428642 cttctgagttgtctgtt 4428626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 4439927 - 4439855
Alignment:
Q  174 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgtt 246  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtt 4439855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 8814385 - 8814483
Alignment:
Q  148 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgtt 246  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||||| ||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgtt 8814483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 251412 - 251515
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||     
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtg 251511  T
Q  243 tgtt 246  Q
    ||||    
T  251512 tgtt 251515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  148 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 233  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 246958 - 246862
Alignment:
Q  150 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgtt 246  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| |||||||| ||||    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgtgtgtt 246862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 20694304 - 20694423
Alignment:
Q  128 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 227  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  228 tgcttcggatttgtctgttg 247  Q
    |||||||||||||| |||||    
T  20694404 tgcttcggatttgtgtgttg 20694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 7041612 - 7041496
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  225 ttctgcttcggatttgt 241  Q
    |||||||||||||||||    
T  7041512 ttctgcttcggatttgt 7041496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 7046937 - 7046833
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||     
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgta 7046838  T
Q  243 tgttg 247  Q
    |||||    
T  7046837 tgttg 7046833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 7025854 - 7025744
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 236  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||   ||      ||||||||||||||||| |||||| ||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgttttctgcttgtgcttcaga 7025755  T
Q  237 tttgtctgttg 247  Q
    ||||| |||||    
T  7025754 tttgtgtgttg 7025744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 9170915 - 9170854
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 7012918 - 7012808
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 236  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||   ||      ||||||||||||||| | |||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgcctgtgcttcgga 7012819  T
Q  237 tttgtctgttg 247  Q
    ||||| |||||    
T  7012818 tttgtgtgttg 7012808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 9159515 - 9159574
Alignment:
Q  145 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 204  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 3695792 - 3695687
Alignment:
Q  138 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 237  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  238 ttgtctg 244  Q
    |||||||    
T  3695693 ttgtctg 3695687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  125 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 224  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  225 ttctgcttc 233  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 18571213 - 18571103
Alignment:
Q  139 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 235  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  236 atttgtctgtt 246  Q
    |||||| ||||    
T  18571113 atttgtgtgtt 18571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 33541750 - 33541646
Alignment:
Q  143 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 242  Q
    |||||||||||| | | ||||| |||||   ||||||||| ||||  ||||||||||| |||  ||  ||||| |||||||| |||||||| ||||||||    
T  33541750 atgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgcttctgatttgtc 33541651  T
Q  243 tgttg 247  Q
     ||||    
T  33541650 cgttg 33541646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University