View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_310 (Length: 246)
Name: NF6864A_low_310
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_310 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35449813 - 35450052
Alignment:
| Q |
1 |
catcagtagagaaagagatgaagcacatgaaaaatgtgaaatacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35449813 |
catcattagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtt |
35449912 |
T |
|
| Q |
101 |
tcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
35449913 |
tcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcac |
35450012 |
T |
|
| Q |
201 |
caattattgatgaatcaatgattgaagtactaacaccaaa |
240 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35450013 |
caattattgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
8 |
agagaaagagatgaagcacatgaaaaatgtgaaatacttctcttggaaaagctagttttccatcaacaa |
76 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||| |||| |||||| || ||||||| |||||| |
|
|
| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University