View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_312 (Length: 246)
Name: NF6864A_low_312
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_312 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4124008 - 4124241
Alignment:
| Q |
1 |
atctgctgggtgtgtgaagctatccctgattgttgctccagatctgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgtt |
100 |
Q |
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|||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124008 |
atctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgtt |
4124107 |
T |
|
| Q |
101 |
gaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4124108 |
gaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatctt |
4124207 |
T |
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| Q |
201 |
tgagtggttgatctctgtttgcaatccatatatt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4124208 |
tgagtggttgatctctgtttgcaatccatatatt |
4124241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4153358 - 4153591
Alignment:
| Q |
1 |
atctgctgggtgtgtgaagctatccctgattgttgctccagatctgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgtt |
100 |
Q |
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|||||| ||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153358 |
atctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgtt |
4153457 |
T |
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| Q |
101 |
gaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctt |
200 |
Q |
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| T |
4153458 |
gaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaatctt |
4153557 |
T |
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| Q |
201 |
tgagtggttgatctctgtttgcaatccatatatt |
234 |
Q |
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| T |
4153558 |
tgagtggttgatctctgtttgcaatccatatatt |
4153591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4134553 - 4134783
Alignment:
| Q |
1 |
atctgctgggtgtgtgaagctatccctgattgttgctccagatctgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgtt |
100 |
Q |
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|||||| ||||||||||| ||||||| ||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||| |
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| T |
4134553 |
atctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgtt |
4134652 |
T |
|
| Q |
101 |
gaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctt |
200 |
Q |
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||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4134653 |
gaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctt |
4134752 |
T |
|
| Q |
201 |
tgagtggttgatctctgtttgcaatccatat |
231 |
Q |
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| T |
4134753 |
tgagtggttgatctctgtttgcaatccatat |
4134783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 4145362 - 4145585
Alignment:
| Q |
8 |
gggtgtgtgaagctatccctgattgttgctccagatctgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatg |
107 |
Q |
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||||||||||| ||||||| ||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| ||||||||||||||||||||||| |
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| T |
4145362 |
gggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatg |
4145461 |
T |
|
| Q |
108 |
aaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctttgagtgg |
207 |
Q |
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| T |
4145462 |
aaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtgg |
4145561 |
T |
|
| Q |
208 |
ttgatctctgtttgcaatccatat |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
4145562 |
ttgatctctgtttgcaatccatat |
4145585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 4163718 - 4163950
Alignment:
| Q |
8 |
gggtgtgtgaagctatccctgattgttgctccagatctgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaa---- |
103 |
Q |
| |
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||||| ||||| ||||||| ||||||| || ||| |||| || || | ||||||||||||| |||| ||||||||||||| |||||| ||||| |
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| T |
4163718 |
gggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttg |
4163817 |
T |
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| Q |
104 |
ga--tgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatcttt |
201 |
Q |
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|| ||||||| |||||||||| || || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
4163818 |
gacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatcctt |
4163917 |
T |
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| Q |
202 |
gagtggttgatctctgtttgcaatccatatatt |
234 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4163918 |
gagtggttgatctctgtttgcaatccatatatt |
4163950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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