View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_314 (Length: 246)

Name: NF6864A_low_314
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_314
NF6864A_low_314
[»] chr2 (9 HSPs)
chr2 (9-240)||(9328917-9329148)
chr2 (98-231)||(9292261-9292388)
chr2 (76-212)||(9321325-9321458)
chr2 (79-137)||(9357604-9357662)
chr2 (164-225)||(9283923-9283984)
chr2 (79-123)||(10353556-10353600)
chr2 (60-122)||(10348227-10348289)
chr2 (68-129)||(9283830-9283891)
chr2 (162-231)||(10348121-10348190)
[»] chr4 (1 HSPs)
chr4 (79-123)||(26575308-26575352)
[»] chr3 (1 HSPs)
chr3 (162-206)||(37462853-37462897)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 9329148 - 9328917
Alignment:
Q  9 cctaccacttgctgaccctaacattcttgattctgacaacatccgtcacttctccttacgcattcccggtttcggttttgagcctgtatccggtgattac 108  Q
    |||||| ||||||  ||||||||||||||| ||||||||||||| || |||||||||| || ||| ||||||||||||||| ||| ||||||||||||||    
T  9329148 cctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattac 9329049  T
Q  109 aaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaatta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9329048 aaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaataa 9328949  T
Q  209 ttcctgctatgccctacgctcttgtctctgct 240  Q
    ||||||||||||||||||||||||||| ||||    
T  9328948 ttcctgctatgccctacgctcttgtctatgct 9328917  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 9292388 - 9292261
Alignment:
Q  98 ccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactc 197  Q
    |||| ||||||||||||||||||||| ||||||||||||| | | ||      | |||||||| |||||| || |||||||||| ||| ||||| |||||    
T  9292388 ccggcgattacaaactcctcagaatctcttggatagccgacctacat------tactcttttgatccacaggtgagactcttcagctccaaaactaactc 9292295  T
Q  198 ttggaaaattattcctgctatgccctacgctctt 231  Q
     |||||||| ||||||  |||||| |||||||||    
T  9292294 gtggaaaatcattcctagtatgccgtacgctctt 9292261  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 212
Target Start/End: Complemental strand, 9321458 - 9321325
Alignment:
Q  76 ggtttcggttttgagcctgtatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagac 175  Q
    |||||||||||||| ||| || |||| ||||||||||||||||||||| ||||| |||||  ||||    | |  || | || || | ||||||||||||    
T  9321458 ggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcctctcca---cacaactctttttatgattcacatgtcagac 9321362  T
Q  176 tcttcaactctaaaacaaactcttggaaaattattcc 212  Q
    |||||| ||||| ||||||||| |||||||| |||||    
T  9321361 tcttcagctctataacaaactcgtggaaaataattcc 9321325  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 9357662 - 9357604
Alignment:
Q  79 ttcggttttgagcctgtatccggtgattacaaactcctcagaatcgcttggatagccga 137  Q
    ||||||||||| ||| || |||| ||||||||||||||||||||| |||||||||||||    
T  9357662 ttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggatagccga 9357604  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 9283923 - 9283984
Alignment:
Q  164 cacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctac 225  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| ||||||  ||||||||||    
T  9283923 cacatgccagactcttcagctccaaaacaaactcgtggaaaataattcctattatgccctac 9283984  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 10353600 - 10353556
Alignment:
Q  79 ttcggttttgagcctgtatccggtgattacaaactcctcagaatc 123  Q
    |||||||||||  |||||||||| |||||||||||||||||||||    
T  10353600 ttcggttttgattctgtatccggcgattacaaactcctcagaatc 10353556  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 10348289 - 10348227
Alignment:
Q  60 ctccttacgcattcccggtttcggttttgagcctgtatccggtgattacaaactcctcagaat 122  Q
    ||||||| || ||| ||| ||||||||||| |   ||||||||||||||||||||||||||||    
T  10348289 ctccttatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 9283830 - 9283891
Alignment:
Q  68 gcattcccggtttcggttttgagcctgtatccggtgattacaaactcctcagaatcgcttgg 129  Q
    |||||| ||| ||||||||||| ||| || |||| ||||||||||||||| ||||| |||||    
T  9283830 gcattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttgg 9283891  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 10348190 - 10348121
Alignment:
Q  162 tccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 231  Q
    |||||| || |||||||||| ||  ||||||||||| ||||| || |||||||||||||| |||| ||||    
T  10348190 tccacaagtgagactcttcagcttgaaaacaaactcatggaagataattcctgctatgccgtacgatctt 10348121  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 26575352 - 26575308
Alignment:
Q  79 ttcggttttgagcctgtatccggtgattacaaactcctcagaatc 123  Q
    |||||||||||  || ||||||| |||||||||||||||||||||    
T  26575352 ttcggttttgattctttatccggcgattacaaactcctcagaatc 26575308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 37462897 - 37462853
Alignment:
Q  162 tccacatgtcagactcttcaactctaaaacaaactcttggaaaat 206  Q
    ||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  37462897 tccacatgtgagactcttcagctccaaaacaaactcgtggaaaat 37462853  T

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