View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_323 (Length: 245)
Name: NF6864A_low_323
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_323 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 42662643 - 42662420
Alignment:
| Q |
22 |
ttggctatattacctctctctggtccaagttctgttcaaagtccagataattcagaaatgtggaatggaatatccatgagcctaacatcaaaggaaactg |
121 |
Q |
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| T |
42662643 |
ttggctatcttacctctctctggtccaagttctgttcaaagtccagataattcagaaatgtggaatggaatatccatgagcctaacatcaaaggaaactg |
42662544 |
T |
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| Q |
122 |
gtgaagattggtggtttgatgatgtttcttcacttagtttacctttgtataaaagatttatgcaaggtgctattgccagacacatgaaaccaaggagagt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42662543 |
gtgaagattggtggtttgatgatgtttcttcacttagtttacctttgtataaaagatttatgcaaggtgctattgctagacacatgaaaccaaggagagt |
42662444 |
T |
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| Q |
222 |
ttctggatcacttgtttactatgc |
245 |
Q |
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|||||||||||||||||||||||| |
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| T |
42662443 |
ttctggatcacttgtttactatgc |
42662420 |
T |
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