View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_324 (Length: 245)

Name: NF6864A_low_324
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_324
NF6864A_low_324
[»] chr5 (7 HSPs)
chr5 (6-245)||(29013081-29013321)
chr5 (51-235)||(29365815-29365999)
chr5 (20-179)||(24085110-24085269)
chr5 (6-101)||(29014953-29015048)
chr5 (35-91)||(11095406-11095462)
chr5 (34-84)||(10391444-10391494)
chr5 (37-77)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (34-88)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (32-83)||(24193632-24193683)
chr4 (34-87)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (34-84)||(41809163-41809213)
chr2 (35-83)||(787435-787483)
chr2 (34-90)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (34-87)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 29013081 - 29013321
Alignment:
Q  6 gtttggtgtttgtattcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttcaatcaaag 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29013081 gtttggtgtttgtgttcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttaaatcaaag 29013180  T
Q  106 ttttcaacttttccactaaataattgaacccaatagatcatattgaataaaaacctcactcacgtaagagaaacnnnnnnncaagctacaaaaagaaaca 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  29013181 ttttcaacttttccactaaataattgaacccaatagagcatattgaataaaaacctcactcacgtaagagaaacaaaaaaacaagctacaaaaagaaaca 29013280  T
Q  206 -tttttccataatctatatgaaagtcatgaaccaacaattt 245  Q
     |||||||||||||||||||||||| |||||||||||||||    
T  29013281 ttttttccataatctatatgaaagttatgaaccaacaattt 29013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 29365815 - 29365999
Alignment:
Q  51 cagcagataagcttcaataatccaatccaaacagaccttaaactttcaatcaaagttttcaacttttccactaaataattgaacccaatagatcatattg 150  Q
    |||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  29365815 cagcagataagcctcaataatccaatccaaatggaccttaaactt-caatcaaagttttcaatttttccactaaatagttgaacccaatagagcatattg 29365913  T
Q  151 aataaaaacctcactcacgtaagagaaacnnnnnnncaagctacaaaaagaaacattttt-ccataatctatatgaaagtcatgaa 235  Q
    ||||||||| |||||||| | ||||||||       |||||||||||||||||||||||| |||||||||||||||| || |||||    
T  29365914 aataaaaacttcactcacatgagagaaacaaaaaaacaagctacaaaaagaaacatttttcccataatctatatgaaggttatgaa 29365999  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 24085110 - 24085269
Alignment:
Q  20 ttcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttcaatcaaagttttcaacttttcc 119  Q
    ||||| ||||| |||||||||||||||||| |||  | |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||     
T  24085110 ttcgtgcttcaaaactcacaagtgtttatgtcagtcggtaagcttctataatccaatccaaacagaccttaaactttcaatccacgttttcaacttttct 24085209  T
Q  120 actaaataattgaacccaatagatcatattgaataaaaacctcactcacgtaagagaaac 179  Q
    || |||||||||||||||||| |  | | ||||| ||||||||| |||| ||||||||||    
T  24085210 acaaaataattgaacccaatatagtaaactgaattaaaacctcagtcacataagagaaac 24085269  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 29014953 - 29015048
Alignment:
Q  6 gtttggtgtttgtattcgtacttcataactcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaaactttcaatc 101  Q
    ||||||||| ||  ||||| ||||| |||||| ||||||||||| |||| | |||||||| |||||||||||||||| | ||||||||||||||||    
T  29014953 gtttggtgtctgggttcgtgcttcagaactcagaagtgtttatgtcagccggtaagcttctataatccaatccaaacgggccttaaactttcaatc 29015048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 11095462 - 11095406
Alignment:
Q  35 tcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagaccttaa 91  Q
    ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||||||||    
T  11095462 tcacaagtgtttatgtcagtagataagcttaaataaaccagtccaaacagaccttaa 11095406  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 10391444 - 10391494
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacag 84  Q
    |||||||||| |||||||||||||||||||| ||||| |||||| ||||||    
T  10391444 ctcacaagtgattatgccagcagataagcttaaataagccaatcgaaacag 10391494  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 34117513 - 34117473
Alignment:
Q  37 acaagtgtttatgccagcagataagcttcaataatccaatc 77  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  34117513 acaagtgtttatgccagtagataagctccaataagccaatc 34117473  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 10016725 - 10016779
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacct 88  Q
    |||||||||||||||||| | |||||||||  ||||| |||||||||||||||||    
T  10016725 ctcacaagtgtttatgcctgtagataagctcaaataaaccaatccaaacagacct 10016779  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 24193632 - 24193683
Alignment:
Q  32 aactcacaagtgtttatgccagcagataagcttcaataatccaatccaaaca 83  Q
    |||||||||||||||||||||| |||||||||  |||||  |||||||||||    
T  24193632 aactcacaagtgtttatgccaggagataagctcaaataagtcaatccaaaca 24193683  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 28615436 - 28615489
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacc 87  Q
    ||||||||||||||||| || |||||| ||| |||||  |||||||||||||||    
T  28615436 ctcacaagtgtttatgctagtagataaacttaaataagtcaatccaaacagacc 28615489  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 41809213 - 41809163
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacag 84  Q
    ||||||||||||||||||| || |||||||| || || |||||||||||||    
T  41809213 ctcacaagtgtttatgccaacaaataagctttaaaaaaccaatccaaacag 41809163  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 787435 - 787483
Alignment:
Q  35 tcacaagtgtttatgccagcagataagcttcaataatccaatccaaaca 83  Q
    ||||||||| ||||||||| ||||| |||  ||||||||||||||||||    
T  787435 tcacaagtgcttatgccagtagatatgctcgaataatccaatccaaaca 787483  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 6547991 - 6548047
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacctta 90  Q
    |||||||||  |||||| || |||||||||| |||||  ||||||||||||||||||    
T  6547991 ctcacaagttcttatgctagtagataagcttgaataagtcaatccaaacagacctta 6548047  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 529464 - 529517
Alignment:
Q  34 ctcacaagtgtttatgccagcagataagcttcaataatccaatccaaacagacc 87  Q
    |||||||||||||||||||| |||||||||  |||||  |||||||| ||||||    
T  529464 ctcacaagtgtttatgccagtagataagctcaaataagtcaatccaatcagacc 529517  T

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