View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_326 (Length: 245)
Name: NF6864A_low_326
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_326 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20816291 - 20816535
Alignment:
| Q |
1 |
atgtcgaaaaatatccaatgaagtttcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacac |
100 |
Q |
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| T |
20816291 |
atgtcgcaaaatatccaatgaagttgcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacac |
20816390 |
T |
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| Q |
101 |
aggatttttgagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcg |
200 |
Q |
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| T |
20816391 |
aggatttttgagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatca |
20816490 |
T |
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| Q |
201 |
ttggtatagtctatgttgttgaccctggattggctacgcagaagg |
245 |
Q |
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| T |
20816491 |
atggtatagtctatgttgttgaccctggattggctaagcagaagg |
20816535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 38779821 - 38779610
Alignment:
| Q |
34 |
gggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttaga |
133 |
Q |
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| T |
38779821 |
gggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaagatttttgagccagctccacctccagttaag |
38779722 |
T |
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| Q |
134 |
gagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgttggtatagtctatgttgttgaccctggattgg |
233 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| || | |||||||||||||||| |||| |||||||| | |
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| T |
38779721 |
gagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggtatagtctatgttattgatcctggatttg |
38779622 |
T |
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| Q |
234 |
ctacgcagaagg |
245 |
Q |
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||| |||||||| |
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| T |
38779621 |
ctaagcagaagg |
38779610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 33388771 - 33388569
Alignment:
| Q |
43 |
ggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttagagagggaggc |
142 |
Q |
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|||||||||||||||||| || | |||||||||| |||||||| |||||||| || | |||||||||||||||||| |||||||||| ||||||||| |
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| T |
33388771 |
ggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaagatttttgagccagctccgcctccagttaaggagggaggc |
33388672 |
T |
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| Q |
143 |
cttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgttggtatagtctatgttgttgaccctggattggctacgcaga |
242 |
Q |
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|| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || | ||||||||| |||||| ||||||||||||| || | ||||| |
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| T |
33388671 |
ctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttattgaccctggatttgccaagcaga |
33388572 |
T |
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| Q |
243 |
agg |
245 |
Q |
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||| |
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| T |
33388571 |
agg |
33388569 |
T |
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