View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_33 (Length: 425)
Name: NF6864A_low_33
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 45099062 - 45099455
Alignment:
| Q |
13 |
aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc |
112 |
Q |
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| T |
45099062 |
aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc |
45099161 |
T |
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| Q |
113 |
ctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099162 |
ctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt |
45099261 |
T |
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| Q |
213 |
tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaatcct |
312 |
Q |
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| T |
45099262 |
tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcattaaaaggagttattttcatacctcctacattaatcct |
45099361 |
T |
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| Q |
313 |
atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
406 |
Q |
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| T |
45099362 |
atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
45099455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 110 - 330
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
| Q |
110 |
tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat |
209 |
Q |
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| T |
17348858 |
tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag |
17348759 |
T |
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| Q |
210 |
gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaat |
309 |
Q |
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|||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
17348758 |
ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat |
17348659 |
T |
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| Q |
310 |
cctatgaacagtttccaaaac |
330 |
Q |
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| T |
17348658 |
cctatgaatagtttctaaaac |
17348638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 17363945 - 17363885
Alignment:
| Q |
271 |
atcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacc |
331 |
Q |
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| T |
17363945 |
atcattaaagggagttattttcaaaccatcaacgttaatcctatgaatagtttctaaaacc |
17363885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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