View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_332 (Length: 244)
Name: NF6864A_low_332
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_332 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 3429300 - 3429505
Alignment:
| Q |
21 |
ccatcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagat |
120 |
Q |
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| T |
3429300 |
ccatcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagat |
3429399 |
T |
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| Q |
121 |
atgggattggagtgtgccataaggagggagtaatagttgtgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtcttc |
220 |
Q |
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| T |
3429400 |
atgggattggagtgtgccataaggagggagtaatagttgcgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtcttc |
3429499 |
T |
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| Q |
221 |
tctgtt |
226 |
Q |
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| |||| |
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| T |
3429500 |
tttgtt |
3429505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 3425822 - 3426021
Alignment:
| Q |
22 |
catcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagata |
121 |
Q |
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|||||||||||| |||||||||| ||||| | |||||||||||| |||| ||||||||||||||||| || ||||| || |||||||||||||||||||| |
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| T |
3425822 |
catcttggttgtcccttgagagtctacaatatgagcatgctagtaccaataacgccaaggctatgagacctataatagcagctagtcctccaaagagata |
3425921 |
T |
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| Q |
122 |
tgggattggagtgtgccataaggagggagtaatagttgtgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtcttct |
221 |
Q |
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||| ||||||||||||||||||||| ||| ||||||||| |||||| |||| |||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
3425922 |
tggcattggagtgtgccataaggagtgaggaatagttgttggggtgatgttagggtgtgtgtttagcaatttggtgggtatactcctcattttgtcttct |
3426021 |
T |
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