View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_339 (Length: 244)

Name: NF6864A_low_339
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_339
NF6864A_low_339
[»] chr4 (11 HSPs)
chr4 (7-243)||(30522755-30522991)
chr4 (109-224)||(30982819-30982935)
chr4 (172-226)||(8423723-8423777)
chr4 (172-226)||(40613450-40613504)
chr4 (179-243)||(13783264-13783328)
chr4 (179-226)||(22440612-22440659)
chr4 (175-226)||(23861439-23861490)
chr4 (179-242)||(36635308-36635371)
chr4 (179-224)||(903924-903969)
chr4 (172-225)||(16189710-16189763)
chr4 (185-226)||(38148743-38148784)
[»] chr1 (28 HSPs)
chr1 (172-243)||(2896126-2896197)
chr1 (177-243)||(15641040-15641106)
chr1 (180-240)||(36878447-36878507)
chr1 (180-243)||(398778-398841)
chr1 (185-240)||(17831549-17831604)
chr1 (158-222)||(44482234-44482299)
chr1 (179-243)||(6427333-6427397)
chr1 (119-226)||(9828044-9828152)
chr1 (172-240)||(13997869-13997937)
chr1 (174-226)||(17754311-17754363)
chr1 (179-231)||(25098567-25098619)
chr1 (172-228)||(34371712-34371767)
chr1 (180-243)||(1486722-1486785)
chr1 (172-243)||(6415006-6415077)
chr1 (174-229)||(7918218-7918273)
chr1 (172-243)||(9709803-9709874)
chr1 (179-226)||(40181871-40181918)
chr1 (172-218)||(1864885-1864931)
chr1 (172-226)||(20157355-20157409)
chr1 (180-226)||(34298436-34298482)
chr1 (172-226)||(38503320-38503374)
chr1 (179-240)||(5898278-5898339)
chr1 (185-226)||(12443478-12443519)
chr1 (158-226)||(25361886-25361955)
chr1 (185-226)||(26238130-26238171)
chr1 (172-228)||(29229459-29229516)
chr1 (185-225)||(31015044-31015084)
chr1 (127-206)||(47989517-47989597)
[»] chr6 (26 HSPs)
chr6 (110-226)||(5000568-5000685)
chr6 (172-243)||(9658862-9658933)
chr6 (172-242)||(7265598-7265668)
chr6 (145-226)||(26562689-26562771)
chr6 (174-226)||(19040352-19040404)
chr6 (172-243)||(9027161-9027232)
chr6 (172-226)||(9025499-9025553)
chr6 (172-218)||(11784221-11784267)
chr6 (137-226)||(18367836-18367926)
chr6 (175-228)||(5462684-5462737)
chr6 (172-225)||(30866149-30866202)
chr6 (119-218)||(5970059-5970159)
chr6 (180-228)||(32511679-32511727)
chr6 (172-226)||(7377979-7378033)
chr6 (179-241)||(7996390-7996452)
chr6 (179-241)||(8022349-8022411)
chr6 (172-226)||(9629383-9629437)
chr6 (173-243)||(13851719-13851789)
chr6 (105-163)||(24831861-24831919)
chr6 (158-243)||(34073337-34073423)
chr6 (172-241)||(5732515-5732584)
chr6 (172-220)||(7086801-7086849)
chr6 (119-206)||(8714000-8714088)
chr6 (173-213)||(11591876-11591916)
chr6 (185-241)||(16766682-16766738)
chr6 (185-225)||(31579243-31579283)
[»] chr3 (15 HSPs)
chr3 (176-244)||(29112289-29112357)
chr3 (172-226)||(7928450-7928504)
chr3 (172-226)||(10690267-10690321)
chr3 (167-229)||(34307780-34307842)
chr3 (181-242)||(2620067-2620128)
chr3 (158-225)||(8039825-8039893)
chr3 (180-243)||(8383240-8383303)
chr3 (188-226)||(13620785-13620823)
chr3 (146-226)||(16192728-16192809)
chr3 (174-223)||(49505161-49505210)
chr3 (175-223)||(4469853-4469901)
chr3 (179-227)||(9624640-9624688)
chr3 (172-244)||(18426931-18427003)
chr3 (185-229)||(26508107-26508151)
chr3 (174-226)||(32804547-32804599)
[»] scaffold0123 (1 HSPs)
scaffold0123 (172-231)||(44530-44589)
[»] chr7 (22 HSPs)
chr7 (185-244)||(23191878-23191937)
chr7 (128-241)||(32308105-32308219)
chr7 (172-226)||(20549791-20549845)
chr7 (172-226)||(22602715-22602769)
chr7 (185-226)||(29787387-29787428)
chr7 (172-240)||(5835233-5835301)
chr7 (180-243)||(1401008-1401071)
chr7 (172-226)||(19206050-19206104)
chr7 (174-240)||(22868028-22868094)
chr7 (151-240)||(26329365-26329455)
chr7 (185-243)||(27945024-27945082)
chr7 (172-226)||(32287468-32287522)
chr7 (172-229)||(3520347-3520404)
chr7 (190-243)||(11722121-11722174)
chr7 (174-223)||(17851434-17851483)
chr7 (185-226)||(30731037-30731078)
chr7 (185-221)||(2424619-2424655)
chr7 (172-224)||(2425738-2425790)
chr7 (174-226)||(5548676-5548728)
chr7 (172-244)||(9482916-9482988)
chr7 (127-226)||(24339642-24339742)
chr7 (172-208)||(39138462-39138498)
[»] chr5 (20 HSPs)
chr5 (174-225)||(12264836-12264887)
chr5 (172-241)||(3966488-3966557)
chr5 (185-244)||(39698523-39698582)
chr5 (179-228)||(6471901-6471950)
chr5 (172-225)||(30502393-30502446)
chr5 (172-225)||(30542736-30542789)
chr5 (173-226)||(41091263-41091316)
chr5 (175-223)||(17593730-17593778)
chr5 (188-243)||(19579684-19579739)
chr5 (158-228)||(22423802-22423873)
chr5 (185-243)||(15410466-15410524)
chr5 (185-243)||(21191074-21191132)
chr5 (174-240)||(27144449-27144515)
chr5 (180-226)||(28588687-28588733)
chr5 (127-239)||(18592060-18592173)
chr5 (185-226)||(27932235-27932276)
chr5 (172-225)||(36838544-36838597)
chr5 (172-240)||(11685925-11685993)
chr5 (174-226)||(12927654-12927706)
chr5 (180-228)||(23016002-23016050)
[»] scaffold0036 (1 HSPs)
scaffold0036 (126-219)||(9705-9799)
[»] chr8 (15 HSPs)
chr8 (173-226)||(34897085-34897138)
chr8 (172-219)||(14134706-14134753)
chr8 (127-218)||(11927045-11927137)
chr8 (187-227)||(18067954-18067994)
chr8 (174-226)||(24362209-24362261)
chr8 (179-226)||(4611534-4611581)
chr8 (179-226)||(39954291-39954338)
chr8 (172-226)||(7658463-7658517)
chr8 (172-226)||(13844601-13844655)
chr8 (172-226)||(31236582-31236636)
chr8 (185-243)||(37283828-37283886)
chr8 (174-243)||(31109525-31109594)
chr8 (180-220)||(3025557-3025597)
chr8 (172-240)||(4786343-4786411)
chr8 (179-239)||(11803246-11803306)
[»] chr2 (13 HSPs)
chr2 (172-240)||(18276507-18276575)
chr2 (179-243)||(21616745-21616809)
chr2 (172-228)||(44860318-44860374)
chr2 (172-243)||(23718009-23718080)
chr2 (172-243)||(24105681-24105752)
chr2 (173-226)||(37411250-37411303)
chr2 (180-224)||(25846743-25846787)
chr2 (179-226)||(28677909-28677956)
chr2 (185-239)||(21782836-21782890)
chr2 (172-241)||(20242732-20242801)
chr2 (180-225)||(31018591-31018636)
chr2 (180-244)||(27286305-27286369)
chr2 (174-226)||(31808077-31808129)
[»] scaffold0004 (1 HSPs)
scaffold0004 (185-244)||(92789-92848)
[»] scaffold1528 (1 HSPs)
scaffold1528 (174-226)||(1035-1087)
[»] scaffold0652 (1 HSPs)
scaffold0652 (185-243)||(480-538)
[»] scaffold0103 (1 HSPs)
scaffold0103 (185-243)||(51794-51852)
[»] scaffold0020 (1 HSPs)
scaffold0020 (172-226)||(135317-135371)
[»] scaffold0168 (1 HSPs)
scaffold0168 (151-243)||(21026-21119)
[»] scaffold0022 (1 HSPs)
scaffold0022 (173-218)||(90851-90896)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 30522755 - 30522991
Alignment:
Q  7 tatggtgttcgaccgaaagataaataaaatctgaagaagaagaaaattgtttaagttaagaatttgatctcaaattatttcgaatgacttgtttctatca 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |    
T  30522755 tatggagttcgaccgaaagataaataaaatctgaagaagaagaaaattgtttaagctaagaatttgatctcagattatttcgaatgacttgtttctatga 30522854  T
Q  107 cagacactttttggattggacgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgacccgacatatatagttacactgaatcatgtgatttt 206  Q
    |||||||| |||||||| ||||||||||| ||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||    
T  30522855 cagacactctttggattagacgtgtctcggtgtcagatatgtgtcgtgtttgacgccgatccgacccaacatatatagttacactgaattatgtgatttt 30522954  T
Q  207 ctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||||||||||||||||| ||| ||||||| |||||    
T  30522955 ctcaaataattagcggtgtgagcgtatcagtatccgt 30522991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 30982819 - 30982935
Alignment:
Q  109 gacactttttggattggacgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttc 207  Q
    |||||| |||||||| | |||||| || |||| || | ||| ||||| |||||||||| |||| ||||||  |||| ||||||||||  |||||||||||    
T  30982819 gacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttc 30982918  T
Q  208 tcaaataattagcggtg 224  Q
    |||||| ||||||||||    
T  30982919 tcaaatcattagcggtg 30982935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 8423723 - 8423777
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  8423723 ccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtc 8423777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 40613504 - 40613450
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||| ||||||||||||||||  ||||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattttctcaaaatattagcggtgtc 40613450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 13783328 - 13783264
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||| |||||||||||  |||||| |||||||||||||||||||||| |  | |||||||||||    
T  13783328 atataattacactgaattttgtgatcttctcaaataattagcggtgtcggtgtgtcagtgtccgt 13783264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 22440612 - 22440659
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||||||||| ||||||||||||||||| |||| |||||||    
T  22440612 atataattacactgaattatgtgattttctcaaattattaacggtgtc 22440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 23861439 - 23861490
Alignment:
Q  175 acatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||| ||||| |||||||||||||||| |||| | ||||||||||||    
T  23861439 acatatataattacattgaatcatgtgattttatcaatttattagcggtgtc 23861490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 36635371 - 36635308
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccg 242  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| |||||  || | ||||||||||    
T  36635371 atataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccg 36635308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 903969 - 903924
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtg 224  Q
    ||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  903969 atataattacactgaattatgtgattttctcaaattattaacggtg 903924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 16189763 - 16189710
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||||| | ||| ||||||||||| |||||||||||||||||  ||||||||||    
T  16189763 ccgacacacataattacactgaattatgtgattttctcaaatttttagcggtgt 16189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 38148743 - 38148784
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||||| ||||||||||||||||  ||||||||||||    
T  38148743 ttacactgaattatgtgattttctcaaactattagcggtgtc 38148784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 2896126 - 2896197
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| || | |||||||||||    
T  2896126 ccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgt 2896197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 15641040 - 15641106
Alignment:
Q  177 atatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||||| || | |||||||||||    
T  15641040 atatatagttacactgaatcatgtgattttcttaaattattagcagtgtcggcatgtcagtgtccgt 15641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 36878507 - 36878447
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||| || | ||||||||    
T  36878507 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 398778 - 398841
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||| ||||||||||| |||||||||| |||||| |||||||||||| || | |||||||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgt 398841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 17831549 - 17831604
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    ||||||||||| ||||||||||||||||| |||||||||||| || | ||||||||    
T  17831549 ttacactgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 17831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 44482299 - 44482234
Alignment:
Q  158 gacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcgg 222  Q
    ||||||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || |||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 6427397 - 6427333
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||||  || | |||||||||||    
T  6427397 atataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgt 6427333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 9828152 - 9828044
Alignment:
Q  119 ggattggacgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataatt 217  Q
    ||||| |||||||| || |||| || | ||| ||||| |||||| ||| |||| |||||| ||| | ||||||||||| |||||||||| |||||| |||    
T  9828152 ggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgattttatcaaattatt 9828053  T
Q  218 agcggtgtc 226  Q
    || ||||||    
T  9828052 agtggtgtc 9828044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 13997937 - 13997869
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||||| ||||| ||||||||||| |||||||||| | ||||||||| ||||||| || | ||||||||    
T  13997937 ccgacacatataattacactgaattatgtgatttttttaaataattaacggtgtcggcgtgtcagtgtc 13997869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 17754363 - 17754311
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||||||||||||||| |||| ||||| |||||| ||||||||||||    
T  17754363 gacacatatagttacactgaattatgtaattttttcaaattattagcggtgtc 17754311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 25098567 - 25098619
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagctt 231  Q
    ||||| ||||||||||| ||||||||||||||||| || ||||||||| ||||    
T  25098567 atataattacactgaattatgtgattttctcaaattatcagcggtgtcggctt 25098619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 34371767 - 34371712
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    |||||| ||||| ||||||||||| ||||||||||||| ||| ||||||||||||||    
T  34371767 ccgacacatataattacactgaattatgtgattttctc-aattattagcggtgtcag 34371712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 1486722 - 1486785
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||| ||||||||||| |||||||||| |||||| |||||| |||||||| | ||||| |||||    
T  1486722 tataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgt 1486785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 6415006 - 6415077
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||| || || ||| |||| || ||||||||||||||||||||||||| |||| || | |||||||||||    
T  6415006 ccgacacatctaattaaactgtattatgtgattttctcaaataattagcgatgtcggcgtgtcagtgtccgt 6415077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 7918218 - 7918273
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagc 229  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||| | |||||||    
T  7918218 gacacatataattacactgaattatgtgattttctcaaattattagtgatgtcagc 7918273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 9709874 - 9709803
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||| ||||| |||||  |||| ||||||||||||||||| |||||||||||  || | |||||||||||    
T  9709874 ccgacacatataattacaacgaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtccgt 9709803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 40181918 - 40181871
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||||||||| ||||||||||||||||| |||||| |||||    
T  40181918 atataattacactgaattatgtgattttctcaaattattagcagtgtc 40181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 1864885 - 1864931
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataatta 218  Q
    |||||| ||||| ||||||||||| ||||||||||||||||| ||||    
T  1864885 ccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 20157355 - 20157409
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||  ||||||||||| |||||||||||||| || ||||||||||||    
T  20157355 ccgacacatatgattacactgaattatgtgattttctcacattattagcggtgtc 20157409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 34298482 - 34298436
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||||||||| ||||||||||||||||| ||||| ||||||    
T  34298482 tataattacactgaattatgtgattttctcaaattattagtggtgtc 34298436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 38503374 - 38503320
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||  || |||||||||||||| ||||||||||||    
T  38503374 ccgacacatataattacactgaaatatatgattttctcaaattattagcggtgtc 38503320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 5898278 - 5898339
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    ||||| ||||||||||| |||||||||| ||| || |||||||||||| || | ||||||||    
T  5898278 atataattacactgaattatgtgattttttcagattattagcggtgtcggcgtctcagtgtc 5898339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 12443478 - 12443519
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||||| ||||||||||||||||| |||||| |||||    
T  12443478 ttacactgaattatgtgattttctcaaattattagctgtgtc 12443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 25361955 - 25361886
Alignment:
Q  158 gacaccgacccgaccc-gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||| |||| | |||| ||||| ||||||||||| ||||||||||||||||| || || ||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaattatcagtggtgtc 25361886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 26238130 - 26238171
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||||| |||| |||||||||||| ||||||||||||    
T  26238130 ttacactgaattatgttattttctcaaattattagcggtgtc 26238171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 29229516 - 29229459
Alignment:
Q  172 ccgacatatatagttac-actgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    |||||| ||||| |||| ||| ||||||||||||||||||||| |||||| |||||||    
T  29229516 ccgacacatataattaccactaaatcatgtgattttctcaaattattagcagtgtcag 29229459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 31015084 - 31015044
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  31015084 ttacactgaattatgtgattttctcaaattattagctgtgt 31015044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 47989597 - 47989517
Alignment:
Q  127 cgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgatttt 206  Q
    |||||| |||||||||| ||||| |||||  ||||||||| |||| ||||||  | || ||||||||||| ||||||||||    
T  47989597 cgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgatttt 47989517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 5000568 - 5000685
Alignment:
Q  110 acactttttggattggacgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgaccc-gacatatatagttacactgaatcatgtgattttct 208  Q
    ||||| || ||||| ||||||||  | |||| |||||||| ||||| ||||||||||  ||| | |||||||| | ||| ||||||||||||||||||||    
T  5000568 acactcttcggattagacgtgtcctggtgtcggatatgtgtcgtgtctgacaccgacatgacactgacatataaaattatactgaatcatgtgattttct 5000667  T
Q  209 caaataattagcggtgtc 226  Q
    | ||| ||||||||||||    
T  5000668 cgaattattagcggtgtc 5000685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 9658933 - 9658862
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||| || | |||||||||||    
T  9658933 ccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgt 9658862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 7265598 - 7265668
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccg 242  Q
    |||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||  || | ||||||||||    
T  7265598 ccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 26562771 - 26562689
Alignment:
Q  145 atgtgccgtgtttgacaccgacccgacc-cgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||||||||| ||||||||| ||||  ||||| ||||| ||||||||||| |||||||||||||||||  ||||| |||||    
T  26562771 atgtgccgtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtc 26562689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 19040404 - 19040352
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  19040404 gacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 19040352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 9027232 - 9027161
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||| ||||| |||||| |||| |||||||| |||||||| |||||||||||| || | |||||||||||    
T  9027232 ccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgt 9027161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 9025499 - 9025553
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||| ||||||||||||||||| |||||| |||||    
T  9025499 ccgacacatataattacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 11784221 - 11784267
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataatta 218  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  11784221 ccgacatatataattacactgattcatgtgattttctcaaattatta 11784267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 18367926 - 18367836
Alignment:
Q  137 tgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||| ||||| ||||| |||||||||| |||| |||||| ||||| |||||||| ||  ||||||||||| ||| ||||||| |||||    
T  18367926 tgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtc 18367836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 5462737 - 5462684
Alignment:
Q  175 acatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    ||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||    
T  5462737 acatatataattacaatgaattatgtgattttctcaaattattaacggtgtcag 5462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 30866149 - 30866202
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||||| ||||| ||||| ||||| ||||||||||||||||| |||||||||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtgt 30866202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 5970059 - 5970159
Alignment:
Q  119 ggattggacgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataatt 217  Q
    ||||||| |||||| ||||||| || ||||| |||||  ||||||||| |||| || |||| | || ||||||||||| |||||||||| |||||| |||    
T  5970059 ggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattatt 5970158  T
Q  218 a 218  Q
    |    
T  5970159 a 5970159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 32511679 - 32511727
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||||||    
T  32511679 tataattacactgaattatgtgattttcttaaattattagcggtgtcag 32511727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7378033 - 7377979
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||| ||||| |||||||||||||||||  |||||||||||    
T  7378033 ccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtc 7377979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 7996390 - 7996452
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtcc 241  Q
    ||||| ||||||||||| || |||||||||||||| |||||| ||||| || | |||||||||    
T  7996390 atataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtcc 7996452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 8022411 - 8022349
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtcc 241  Q
    ||||| ||||||||||| || |||||||||||||| |||||| ||||| || | |||||||||    
T  8022411 atataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtcc 8022349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 9629437 - 9629383
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||| ||||| ||||||||||||||||| ||| ||||||||    
T  9629437 ccgacacatataattacattgaattatgtgattttctcaaattattggcggtgtc 9629383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 13851789 - 13851719
Alignment:
Q  173 cgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||| ||||| ||||||||||| | || |||||||||||| ||||||||||||  | | |||||||||||    
T  13851789 cgacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgt 13851719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 24831919 - 24831861
Alignment:
Q  105 cacagacactttttggattggacgtgtctcgatgtcagatatgtgccgtgtttgacacc 163  Q
    |||||||||| || ||||| |||||||| ||||||||||||| ||  ||||||||||||    
T  24831919 cacagacactcttcggattagacgtgtcccgatgtcagatatatgttgtgtttgacacc 24831861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 34073337 - 34073423
Alignment:
Q  158 gacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||||||| |||| |||||  ||||| ||||||||||| ||| ||||||||||||| ||||||| |||  || | |||||||||||    
T  34073337 gacaccgacacgacaccgacccatataattacactgaattatgagattttctcaaattattagcgatgttggcatgtcagtgtccgt 34073423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 5732515 - 5732584
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtcc 241  Q
    |||||| ||||| ||||||| ||  ||||||||||||||||| |||| ||||||| || | |||||||||    
T  5732515 ccgacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtcc 5732584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 7086849 - 7086801
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagc 220  Q
    |||||| ||||| ||||||| ||| ||||||||||||||||| ||||||    
T  7086849 ccgacacatataattacactaaattatgtgattttctcaaattattagc 7086801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 8714088 - 8714000
Alignment:
Q  119 ggattggacgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgatttt 206  Q
    ||||||| |||||| ||||||| || ||||| |||||  ||||||||| |||| || |||| | || ||||||||||| ||||||||||    
T  8714088 ggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgatttt 8714000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 11591876 - 11591916
Alignment:
Q  173 cgacatatatagttacactgaatcatgtgattttctcaaat 213  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  11591876 cgacacatataattacactgaattatgtgattttctcaaat 11591916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 16766738 - 16766682
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtcc 241  Q
    ||||||||||| |||||||||| |||||| |||||| ||||| || | |||||||||    
T  16766738 ttacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcc 16766682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 31579243 - 31579283
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  31579243 ttacactgaattatgtgattttctcaaattattaacggtgt 31579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 29112289 - 29112357
Alignment:
Q  176 catatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgta 244  Q
    |||||||| ||||||||||| || |||||||||||||||||||| ||||||| | | ||||||||||||    
T  29112289 catatataattacactgaattatatgattttctcaaataattagtggtgtcaacgtgtcagtgtccgta 29112357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7928504 - 7928450
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||| |||||||||| |||||| ||||||||||||    
T  7928504 ccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtc 7928450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 10690267 - 10690321
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||    
T  10690267 ccgacaaatataattacactgaattatgtgattttctcagattattagcggtgtc 10690321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 34307780 - 34307842
Alignment:
Q  167 ccgacccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagc 229  Q
    ||||| |||||  |||| ||||||||||  ||||||||||||||||| |||||||||||||||    
T  34307780 ccgacacgacacttataattacactgaaatatgtgattttctcaaattattagcggtgtcagc 34307842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 2620067 - 2620128
Alignment:
Q  181 atagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccg 242  Q
    ||||||||||| ||| ||||||||||||||||| ||||| |||||| || | ||||||||||    
T  2620067 atagttacacttaattatgtgattttctcaaatgattagtggtgtcggcgtgtcagtgtccg 2620128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  158 gacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    ||||||||| |||| |||||| ||||| ||||||||||| || | |||||||||||| |||||||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 8383303 - 8383240
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||| ||||||||||| || |||||||||||||| |||||||||||| || | ||| |||||||    
T  8383303 tataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgt 8383240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 13620785 - 13620823
Alignment:
Q  188 cactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  13620785 cactgaatcatgtgattttctcaaattactagcggtgtc 13620823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 16192728 - 16192809
Alignment:
Q  146 tgtgccgtgtttgacaccgacccgacc-cgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||| |||||||||| ||||  | ||| ||||| ||||||||||| |||| |||||||||||| |||| |||||||    
T  16192728 tgtgtcgtgtctgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtc 16192809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 49505161 - 49505210
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggt 223  Q
    |||| ||||| ||||||| ||| ||||||||||||||||| |||||||||    
T  49505161 gacacatataattacactaaattatgtgattttctcaaattattagcggt 49505210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 4469901 - 4469853
Alignment:
Q  175 acatatatagttacactgaatcatgtgattttctcaaataattagcggt 223  Q
    ||||||||| ||||||||||| |||||||||||| |||| ||| |||||    
T  4469901 acatatatacttacactgaattatgtgattttcttaaattattggcggt 4469853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 9624688 - 9624640
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtca 227  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||| ||||||    
T  9624688 atataattacattgaattatgtgattttctcaaattattagcagtgtca 9624640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 18427003 - 18426931
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgta 244  Q
    |||||||||||| |||||| |||| |||||||||| | |||| ||||| |||||| || | || |||||||||    
T  18427003 ccgacatatataattacaccgaattatgtgattttttgaaattattagtggtgtcggcgtgtccgtgtccgta 18426931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 26508151 - 26508107
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagc 229  Q
    ||||||||||| |||||||||| |||||| |||||| ||||||||    
T  26508151 ttacactgaattatgtgattttttcaaattattagctgtgtcagc 26508107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 32804547 - 32804599
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||| ||||||| ||| ||||||||||||||||| |||| |||||||    
T  32804547 gacacatataattacactaaattatgtgattttctcaaattattaacggtgtc 32804599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 44530 - 44589
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagctt 231  Q
    |||||| ||||| ||||||||||| |||||||||||||||||  ||||||||||||||||    
T  44530 ccgacacatataattacactgaattatgtgattttctcaaatttttagcggtgtcagctt 44589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 23191937 - 23191878
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgta 244  Q
    ||||||||||  ||||||||||||||||| |||||||||||| || ||||||||||||||    
T  23191937 ttacactgaaatatgtgattttctcaaattattagcggtgtcggcgtatcagtgtccgta 23191878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 32308219 - 32308105
Alignment:
Q  128 gtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgaccc-gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||||| |||| || ||||| |||||   |||||||| |||| | |||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||    
T  32308219 gtgtctcggtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtc 32308120  T
Q  227 agcttatcagtgtcc 241  Q
     || | |||||||||    
T  32308119 ggcgtgtcagtgtcc 32308105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 20549845 - 20549791
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||| | ||||||||||||||| ||||||||||||    
T  20549845 ccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtc 20549791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 22602715 - 22602769
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||  |||||||    
T  22602715 ccgacacatataattacactgaattatgtgattttctcaaataatttacggtgtc 22602769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 29787387 - 29787428
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  29787387 ttacactgaattatgtgattttctcaaattattagcggtgtc 29787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 5835301 - 5835233
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||||| ||||| ||||||||||| |||| |||||||||||  ||||| |||||| || ||||||||||    
T  5835301 ccgacacatataattacactgaattatgttattttctcaaactattagtggtgtcggcgtatcagtgtc 5835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 1401071 - 1401008
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||| ||||||||||| |||||| |||||||||| ||||||| | ||||| | |||||||||||    
T  1401071 tataattacactgaattatgtgagtttctcaaattattagcgatatcagcgtgtcagtgtccgt 1401008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 19206104 - 19206050
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||| | ||||| ||||||||||||||||| ||||||||||||    
T  19206104 ccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtc 19206050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 22868094 - 22868028
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||| ||||| ||||||||||| |||||||||||||| || ||||| |||||| || | ||||||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 26329365 - 26329455
Alignment:
Q  151 cgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    ||||| |||||||||| |||| |||||| ||||| |||||||||||  |||| ||||||||||| |||| || |||| || | ||||||||    
T  26329365 cgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtc 26329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 27945082 - 27945024
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||||||||| |||| |||||||||||| ||||| |||||| || | |||||||||||    
T  27945082 ttacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgt 27945024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 32287468 - 32287522
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| || |||||||| |||||||||||||| || ||||||||||||    
T  32287468 ccgacacatatacttgcactgaattatgtgattttctcagattattagcggtgtc 32287522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 3520347 - 3520404
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagc 229  Q
    |||||| ||||| ||||| ||||| || |||||||||||||| |||| ||||||||||    
T  3520347 ccgacacatataattacattgaattatatgattttctcaaatgattatcggtgtcagc 3520404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 11722121 - 11722174
Alignment:
Q  190 ctgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||| |||||||||||||||||  ||||||||||| || | |||||||||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgt 11722174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 17851483 - 17851434
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggt 223  Q
    |||| ||||| ||||||||||| |||||||||||| |||| |||||||||    
T  17851483 gacacatataattacactgaattatgtgattttctaaaattattagcggt 17851434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 30731078 - 30731037
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||    
T  30731078 ttacactgaattatgtgattttctcaaattattcgcggtgtc 30731037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 2424655 - 2424619
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcg 221  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  2424655 ttacactgaattatgtgattttctcaaattattagcg 2424619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 2425738 - 2425790
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtg 224  Q
    |||||| |||||||| |||| ||| ||||||||||||||||| |||| |||||    
T  2425738 ccgacacatatagttccacttaattatgtgattttctcaaattattaacggtg 2425790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 5548728 - 5548676
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||| ||||||||||| || |||||||||||||| || |||||||||    
T  5548728 gacacatataattacactgaattatttgattttctcaaattatcagcggtgtc 5548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 9482988 - 9482916
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgta 244  Q
    |||||| ||||| |||||||||||  |||||||||||||||| || |||| |||| |  | ||||||||||||    
T  9482988 ccgacacatataattacactgaattgtgtgattttctcaaattatcagcgatgtcggtgtgtcagtgtccgta 9482916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 24339742 - 24339642
Alignment:
Q  127 cgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||||| || |||| |||| ||| |||||  ||||||||| |||| ||||||  | || ||||||||||| |||||||||| |||||| |||||| ||||    
T  24339742 cgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgt 24339643  T
Q  226 c 226  Q
    |    
T  24339642 c 24339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 39138498 - 39138462
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttct 208  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  39138498 ccgacatatataattacactgaattatgtgattttct 39138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 12264836 - 12264887
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12264836 gacacatataattacactgaatcatgtaattttctcaaataattagcggtgt 12264887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 3966557 - 3966488
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtcc 241  Q
    |||||| ||||| |||||||||||  |||||||||||||||| |||||||||||| || | |||||||||    
T  3966557 ccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtcc 3966488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 39698582 - 39698523
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgta 244  Q
    ||||||||||| |||||||||| |||||| |||||| |||||||| | ||||||||||||    
T  39698582 ttacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgta 39698523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 6471901 - 6471950
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    ||||| ||||||||||| ||||||||||||||||| |||||| |||||||    
T  6471901 atataattacactgaattatgtgattttctcaaattattagccgtgtcag 6471950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 30502393 - 30502446
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||||| ||||| ||||||||||| | ||||||||||||||| |||||||||||    
T  30502393 ccgacacatataattacactgaattaagtgattttctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 30542736 - 30542789
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||||| ||||| ||||||||||| | ||||||||||||||| |||||||||||    
T  30542736 ccgacacatataattacactgaattaagtgattttctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 41091263 - 41091316
Alignment:
Q  173 cgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| |||||| |||||    
T  41091263 cgacacatataattacactgaattatgtgattttctcaaatcattagcagtgtc 41091316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 17593730 - 17593778
Alignment:
Q  175 acatatatagttacactgaatcatgtgattttctcaaataattagcggt 223  Q
    ||||||||| ||||||||||| | ||||||||||||||| |||||||||    
T  17593730 acatatataattacactgaattacgtgattttctcaaattattagcggt 17593778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 19579739 - 19579684
Alignment:
Q  188 cactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||| ||| ||||||||||||||||| |||||| ||||| || |||||||||||||    
T  19579739 cactaaattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgt 19579684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 22423802 - 22423873
Alignment:
Q  158 gacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    ||||||||| |||| |||||||||||| ||| | ||||| ||||||||||||||||| |||||  |||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaattattagtagtgtcag 22423873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 15410466 - 15410524
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||||||||||| | ||||||| |||| |||||||||||| || | |||||||||||    
T  15410466 ttacactgaatcatataattttcttaaattattagcggtgtcggcgtgtcagtgtccgt 15410524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 21191074 - 21191132
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||||||||| |||||||||| |||||| |||||| ||||| || | |||||||||||    
T  21191074 ttacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgt 21191132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 27144515 - 27144449
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||| ||||| ||||||| ||| ||||||||| ||||||| |||||||||||| || | ||||||||    
T  27144515 gacacatataattacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtc 27144449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 28588687 - 28588733
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||||||||| ||||||||||||||||| |||| |||||||    
T  28588687 tataattacactgaattatgtgattttctcaaattattaccggtgtc 28588733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 18592173 - 18592060
Alignment:
Q  127 cgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||||| |||||||||| | |||  ||||  ||||||||| |||| ||| || ||||| ||||| ||||| |||| ||||||| |||  |||||||||||    
T  18592173 cgtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgt 18592074  T
Q  226 cagcttatcagtgt 239  Q
    | || |||||||||    
T  18592073 cggcatatcagtgt 18592060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 27932276 - 27932235
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||||||||| |||| |||||||||||| ||||||||||||    
T  27932276 ttacactgaattatgtaattttctcaaattattagcggtgtc 27932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 36838597 - 36838544
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||||| ||||| ||||||| ||| |||| |||||||||||| |||||||||||    
T  36838597 ccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 11685993 - 11685925
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||||| ||||| ||||||| ||| ||| || |||||||||| |||||||||||| || | ||||||||    
T  11685993 ccgacacatataattacactaaattatgcgactttctcaaattattagcggtgtcggcatgtcagtgtc 11685925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 12927706 - 12927654
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||||||| ||||||| ||| || |||||||||||||| ||||||| ||||    
T  12927706 gacatatataattacactaaattatatgattttctcaaattattagcgatgtc 12927654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 23016002 - 23016050
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    |||| ||||||||||| ||||||||||||||||| |||| || ||||||    
T  23016002 tataattacactgaattatgtgattttctcaaatgattaacgatgtcag 23016050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 9705 - 9799
Alignment:
Q  126 acgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattag 219  Q
    ||||||| |||||||||| | ||| ||||| ||||||| || |||| |||||| ||||| ||||||||||| | ||||||||||||||| |||||    
T  9705 acgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgattttctcaaattattag 9799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 34897138 - 34897085
Alignment:
Q  173 cgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  34897138 cgacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 34897085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 14134753 - 14134706
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattag 219  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  14134753 ccgacatatataattacactgaattatgtgattttctcaaattattag 14134706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 11927045 - 11927137
Alignment:
Q  127 cgtgtctcgatgtcagatatgtgccgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataatta 218  Q
    |||||||||||||  ||||  || ||||| ||||||| || |||| |||||| ||||| ||||||||||| |||||||||| |||||| ||||    
T  11927045 cgtgtctcgatgttggatacatgtcgtgtatgacaccaacacgacaccgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 18067954 - 18067994
Alignment:
Q  187 acactgaatcatgtgattttctcaaataattagcggtgtca 227  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  18067954 acactgaattatgtgattttctcaaattattagcggtgtca 18067994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 24362209 - 24362261
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||    
T  24362209 gacacatataattacactgaattatgtgattctctcaaattattagcggtgtc 24362261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 4611581 - 4611534
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||||||||| |||| |||||||||||| ||||||||||||    
T  4611581 atataattacactgaattatgttattttctcaaattattagcggtgtc 4611534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 39954291 - 39954338
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||||||||    
T  39954291 atataattacactaaattatgtgattttctcaaattattagcggtgtc 39954338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7658517 - 7658463
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||||||| |||| |||||||||||| ||||| ||||||    
T  7658517 ccgacaaatataattacactgaattatgtaattttctcaaattattagtggtgtc 7658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 13844601 - 13844655
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||||| ||| ||||||||||||||||| |||||| |||||    
T  13844601 ccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtc 13844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 31236582 - 31236636
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| ||||| ||||| ||||||||||||||||| |||||| |||||    
T  31236582 ccgacacatataattacattgaattatgtgattttctcaaattattagcagtgtc 31236636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 37283828 - 37283886
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||||||||| |||||||||||||| || |||||||||| | || | |||||||||||    
T  37283828 ttacactgaattatgtgattttctcagattattagcggtgcccgcatgtcagtgtccgt 37283886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 31109525 - 31109594
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||| ||||||||| |||||||  | |||||||||||||| |||| ||||||| || | |||||||||||    
T  31109525 gacacatatagttagactgaattgtttgattttctcaaattattaacggtgtcggcgtgtcagtgtccgt 31109594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 3025597 - 3025557
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagc 220  Q
    |||| ||||||||||| ||||||||||||||||| ||||||    
T  3025597 tataattacactgaattatgtgattttctcaaattattagc 3025557  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 4786343 - 4786411
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||||| ||||| ||||||||||| |||||||||||| |||| ||||  |||||| || | ||||||||    
T  4786343 ccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 11803306 - 11803246
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgt 239  Q
    ||||| ||||||||||| |||||||||||| |||| |||| | |||||||  |||||||||    
T  11803306 atataattacactgaattatgtgattttcttaaattattaacagtgtcagtgtatcagtgt 11803246  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 18276575 - 18276507
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtc 240  Q
    |||||| | ||| ||||||||||| | ||||||||||||||| |||||||||||| || ||||||||||    
T  18276575 ccgacacacataattacactgaattaagtgattttctcaaattattagcggtgtcggcatatcagtgtc 18276507  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 21616809 - 21616745
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||| || | || ||||||||    
T  21616809 atataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgt 21616745  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 44860374 - 44860318
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcag 228  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||| ||||||||||||||    
T  44860374 ccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtcag 44860318  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 23718080 - 23718009
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||| ||||| ||||||||||| |||||| |||||||||| |||||||||||| |  | |||||||||||    
T  23718080 ccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgt 23718009  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 24105752 - 24105681
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||| ||||| ||||||||||| |||||| |||||||||| |||||||||||| |  | |||||||||||    
T  24105752 ccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgt 24105681  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 37411250 - 37411303
Alignment:
Q  173 cgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||| | ||||||||| ||||||||||||||||| ||||||||||||    
T  37411250 cgacacatataatcacactgaattatgtgattttctcaaattattagcggtgtc 37411303  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 25846787 - 25846743
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtg 224  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||    
T  25846787 tataattacactgaatcatgtgattttctcaaattattagtggtg 25846743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 28677956 - 28677909
Alignment:
Q  179 atatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    ||||| ||||||||||| |||||||||| |||||| ||||||||||||    
T  28677956 atataattacactgaattatgtgattttttcaaattattagcggtgtc 28677909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 21782836 - 21782890
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgt 239  Q
    ||||||||||| ||||||||||||||||| |||||| ||||| || | |||||||    
T  21782836 ttacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 20242732 - 20242801
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtcc 241  Q
    |||||| ||||| ||||||||||| |||||||||||| ||| ||||||  ||||| || | |||||||||    
T  20242732 ccgacacatataattacactgaattatgtgattttctaaaaaaattagttgtgtcggcgtgtcagtgtcc 20242801  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 31018636 - 31018591
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgt 225  Q
    |||| ||||||| |||||||||||||||| |||| |||||||||||    
T  31018636 tataattacactaaatcatgtgattttctgaaattattagcggtgt 31018591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 27286305 - 27286369
Alignment:
Q  180 tatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgta 244  Q
    |||| ||||||| ||| ||||||| || |||||| ||||||| |||| || ||||||||||||||    
T  27286305 tataattacacttaattatgtgatcttatcaaattattagcgttgtcggcgtatcagtgtccgta 27286369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 31808129 - 31808077
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||| ||||||||||| |||||||||| | |||| ||||||||||||    
T  31808129 gacacatataattacactgaattatgtgattttgttaaattattagcggtgtc 31808077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 92848 - 92789
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgta 244  Q
    ||||||||||| |||| |||||||||||| |||||||||||| || | ||||||||||||    
T  92848 ttacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtccgta 92789  T

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Target: scaffold1528 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 1087 - 1035
Alignment:
Q  174 gacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||| ||||||||||||||||| |||| ||||| |||||| ||||||||||||    
T  1087 gacacatatagttacactgaattatgtaattttttcaaattattagcggtgtc 1035  T

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Target: scaffold0652 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 480 - 538
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    |||||||||||  ||||||||| |||||| |||||| ||||| || |||||||||||||    
T  480 ttacactgaattttgtgattttttcaaattattagcagtgtcggcgtatcagtgtccgt 538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 51852 - 51794
Alignment:
Q  185 ttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||||||||| |||||||||| |||||| |||||| ||||| || | |||||||||||    
T  51852 ttacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 51794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 135317 - 135371
Alignment:
Q  172 ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtc 226  Q
    |||||| ||||| |||||| |||| ||||||||||||||||| |||||| |||||    
T  135317 ccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtc 135371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 21119 - 21026
Alignment:
Q  151 cgtgtttgacaccgacccgac-ccgacatatatagttacactgaatcatgtgattttctcaaataattagcggtgtcagcttatcagtgtccgt 243  Q
    ||||| |||||||||| |||  |||||| ||||| ||| || || | ||||||||||||||||| |||| | |||||||| | |||||||||||    
T  21119 cgtgtctgacaccgacacgataccgacacatataattataccgacttatgtgattttctcaaattattaaccgtgtcagcatgtcagtgtccgt 21026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 90896 - 90851
Alignment:
Q  173 cgacatatatagttacactgaatcatgtgattttctcaaataatta 218  Q
    ||||||||||| ||||||||||| || |||||||||||||| ||||    
T  90896 cgacatatataattacactgaattatatgattttctcaaattatta 90851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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