View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_340 (Length: 244)
Name: NF6864A_low_340
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_340 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 39182553 - 39182325
Alignment:
| Q |
10 |
aaatcgcggcaaaaatcttggaggttagactccacaagacttttgagttcttataggtttcaattctttgattttctagtagatgaaatagcaatgactt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39182553 |
aaatcgcggcaaaaatcttggaggttagacttcacaagacttttgagttcttataggtttcaattctttgattttctagtagatgaaatagcaa-gactt |
39182455 |
T |
|
| Q |
110 |
acagccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagtttaattgcatcctatattttcttttcttttcttgcag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||| |||||| |
|
|
| T |
39182454 |
acagccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggatacacaagttttaatgcatcctatatttttttttttttttttgcag |
39182355 |
T |
|
| Q |
210 |
ccggcgaagttgaatattactactgatctg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39182354 |
ccggcgaagttgaatattactactgatctg |
39182325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 2103086 - 2103243
Alignment:
| Q |
10 |
aaatcgcggcaaaaatcttggaggttagactccacaagactttt--gagttcttataggtttcaattctttgattttctagtagatgaaatagcaatgac |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2103086 |
aaatcgtggcaaaaatcttggaggttagacttcacaagacttttctgagttcttattggtttcaattctttgatttcctagtagatgaaatagcaatgac |
2103185 |
T |
|
| Q |
108 |
ttacagccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaatggata |
165 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2103186 |
ttacagccaaagttgctttaaaaaaacatctttcacttgtgtttggttgcaatggata |
2103243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 2103302 - 2103370
Alignment:
| Q |
165 |
acacaagtttaattgcatcctatattttcttttcttttcttgcagccggcgaagttgaatattactactgat |
236 |
Q |
| |
|
|||||||||| | ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2103302 |
acacaagttttaatgcattctatatttt-ttttctttt--tgcagccggcgaagttgaatattactactgat |
2103370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University