View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_343 (Length: 243)
Name: NF6864A_low_343
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_343 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 35407162 - 35406960
Alignment:
| Q |
10 |
ataattctcgaaggctgatcagcttgcctaaccatttaggcagtgtttcaatatccaatccatgcatccattgagtnnnnnnncttgcacataagtattc |
109 |
Q |
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| T |
35407162 |
ataattctcaaaggctgatcagcttgcctaaccatttaggcagtgtttcaatatccaatccatgcatccattgagtaaacaaacttccacataagtattc |
35407063 |
T |
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| Q |
110 |
taatttagcaattgatcaattaagtagagtctcaaacagagaatttcttaaatctaaaacttgcatgtatttaaaagagtttcactatcaagactcactc |
209 |
Q |
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| T |
35407062 |
taatttagcaattgatcaattaagtagagtctcaaacatagaatttcttaaatctaaaacttgcatgtatttaaaaaagtttcactatcaagactcactc |
35406963 |
T |
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| Q |
210 |
ctt |
212 |
Q |
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||| |
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| T |
35406962 |
ctt |
35406960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 35406935 - 35406897
Alignment:
| Q |
205 |
cactccttgacttggggaacaaagaatggcaaattgaaa |
243 |
Q |
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| T |
35406935 |
cactccttgacttggggaacaaagaatgggaaattgaaa |
35406897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 18132940 - 18132985
Alignment:
| Q |
15 |
tctcgaaggctgatcagcttgcctaaccatttaggcagtgtttcaa |
60 |
Q |
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| T |
18132940 |
tctcgaaggctgatcagcttgcctaaccctttaggcagtgtttcaa |
18132985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 18117202 - 18117240
Alignment:
| Q |
205 |
cactccttgacttggggaacaaagaatggcaaattgaaa |
243 |
Q |
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| T |
18117202 |
cactccttgacttggggaacaaagaatcgcaaattgaaa |
18117240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18116902 - 18116943
Alignment:
| Q |
19 |
gaaggctgatcagcttgcctaaccatttaggcagtgtttcaa |
60 |
Q |
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| T |
18116902 |
gaaggctgatcagcttgcctaaccctttaggcaatgtttcaa |
18116943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 18117053 - 18117124
Alignment:
| Q |
107 |
ttctaatttagcaattgatcaattaagtagagtctcaaacagagaatttcttaaatctaaaacttgcatgtattt |
181 |
Q |
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| T |
18117053 |
ttctaatgtagcaattga---attaggtagagtctcgatcgaagaatttcttaaatctaaaactcgcaagtattt |
18117124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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