View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_345 (Length: 243)
Name: NF6864A_low_345
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_345 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 48623185 - 48623410
Alignment:
| Q |
1 |
aaagagtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacaggtttg |
100 |
Q |
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| T |
48623185 |
aaagagtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacaggtttg |
48623284 |
T |
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| Q |
101 |
ctttattcnnnnnnnnnnnnnnnngaagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatannnnnnn |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48623285 |
ctttattcaaaaaaaaaaaa-----aagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatattttttt |
48623379 |
T |
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| Q |
201 |
gacagagaaaggcaatgaaattaatcatatt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
48623380 |
gacagagaaaggcaatgaaattaatcatatt |
48623410 |
T |
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