View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_353 (Length: 242)

Name: NF6864A_low_353
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_353
NF6864A_low_353
[»] chr7 (31 HSPs)
chr7 (36-242)||(21627746-21627954)
chr7 (39-241)||(21681249-21681454)
chr7 (36-146)||(21740671-21740781)
chr7 (45-164)||(21704307-21704426)
chr7 (36-242)||(21713825-21714031)
chr7 (121-242)||(21991458-21991579)
chr7 (36-242)||(21689035-21689235)
chr7 (36-242)||(21791645-21791845)
chr7 (38-110)||(21651734-21651806)
chr7 (187-242)||(21791512-21791567)
chr7 (36-105)||(21784566-21784635)
chr7 (107-174)||(21622745-21622813)
chr7 (36-96)||(21663698-21663758)
chr7 (187-235)||(21663875-21663923)
chr7 (138-241)||(21787953-21788056)
chr7 (36-104)||(21725571-21725639)
chr7 (46-101)||(21784691-21784746)
chr7 (46-104)||(21771645-21771703)
chr7 (187-232)||(21704425-21704470)
chr7 (199-242)||(21622830-21622873)
chr7 (187-242)||(21639468-21639523)
chr7 (187-242)||(21651859-21651914)
chr7 (37-92)||(21991408-21991463)
chr7 (187-224)||(21771759-21771796)
chr7 (187-224)||(21785163-21785200)
chr7 (37-88)||(21622693-21622744)
chr7 (61-99)||(21787911-21787949)
chr7 (187-224)||(21725694-21725731)
chr7 (36-122)||(21639321-21639404)
chr7 (36-70)||(21791419-21791453)
chr7 (188-224)||(21740895-21740931)
[»] scaffold0182 (2 HSPs)
scaffold0182 (36-104)||(34209-34277)
scaffold0182 (187-224)||(34332-34369)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 21627746 - 21627954
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |     
T  21627746 aaaagcaacgatcctatttccatgaattttacttttcttgtccgttgagtaaagtgatggacattatatagtttgttctgaggacaagttactttagcag 21627845  T
Q  136 caaagaggacaggtataaaaatatattaaag-tgaagtgtaaca-nnnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagag 233  Q
      ||||||||||||||||||||  ||||||| |||||||||| |         |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21627846 tgaagaggacaggtataaaaattgattaaagttgaagtgtaagattttgttttaagcaagcatatttacttatcttgctcattaggtaaaggtttgagag 21627945  T
Q  234 aatgaaaat 242  Q
     ||||||||    
T  21627946 catgaaaat 21627954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 21681249 - 21681454
Alignment:
Q  39 agcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaacaa 138  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||||||| |||    
T  21681249 agcaaagatccaatttccatgaattttacttttcttgtccattgagtaaagtgatagacattatatagtttgttctgaggacaagttgctttagtagcaa 21681348  T
Q  139 agaggacaggtat-aaaaatatattaaagtgaagtgtaaca--nnnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaa 235  Q
    ||||||||||||| |||||| |||||||||||||||| | |          |||||||||||||||||||||||||| |||||||||||||||||||| |    
T  21681349 agaggacaggtataaaaaatctattaaagtgaagtgtgagattttttttttaagcaagcatatttacttatcttgtttattaggtaaaggtttgagagca 21681448  T
Q  236 tgaaaa 241  Q
    ||||||    
T  21681449 tgaaaa 21681454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 21740671 - 21740781
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  21740671 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagtgatggacattatatagtttgttatgaggacaagttactttagtaa 21740770  T
Q  136 caaagaggaca 146  Q
    |||||||||||    
T  21740771 caaagaggaca 21740781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 21704307 - 21704426
Alignment:
Q  45 gatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaacaaagagga 144  Q
    |||||| |||||  |||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  21704307 gatcctgtttccgagaattttacttttcttgtacattgagtaaagtgatggacattatata-tttgttctgaggacaagttactttagtaacaaagagga 21704405  T
Q  145 caggtat-aaaaatatattaa 164  Q
    ||||||| |||||||||||||    
T  21704406 caggtataaaaaatatattaa 21704426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 21713825 - 21714031
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||   |||||   |||||||| | || |||||||||||||||||| |     
T  21713825 aaaagcaaagatcttttttccatgaattttacttttcttgtccattgagtaaagcggtggac---atatagttcgttccgaggacaagttactttagcag 21713921  T
Q  136 caaagaggacaggtataaaaatatattaaagt-gaagtgta--acannnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgaga 232  Q
      ||||||||| |||||||||| ||||||||| ||| | ||  | |        ||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  21713922 tgaagaggacaagtataaaaatttattaaagtcgaaatttaagatagtttttttaagaaagcagatttacttaacttgttcattaggtaaaggtttgaga 21714021  T
Q  233 gaatgaaaat 242  Q
    | ||||||||    
T  21714022 gcatgaaaat 21714031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 21991458 - 21991579
Alignment:
Q  121 aagttactttagtaacaaagaggacaggtataaaaa-tatattaaagtgaagtgtaacannnnnnngaagcaagcatatttacttatcttgttcattagg 219  Q
    ||||||||||||||  |||||||||| ||||||||| | ||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  21991458 aagttactttagtagtaaagaggacaagtataaaaaatctattaaagtgaagtgtaacattttttt-aagcaagcatatttacttatcttgttcattagg 21991556  T
Q  220 taaaggtttgagagaatgaaaat 242  Q
    |||||||| ||||||||||||||    
T  21991557 taaaggttcgagagaatgaaaat 21991579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 21689035 - 21689235
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    ||||||||  |||| ||||||||||||||||||||||||  ||||||||| ||||  ||||| |    ||||| | || ||| |||||||||||||| |     
T  21689035 aaaagcaaatatcccttttccatgaattttacttttcttccccattgagttaagtggtggacgtg---tagttcgttccgagaacaagttactttagcag 21689131  T
Q  136 caaagaggacaggtataaaaatatattaaagtg-aagtgtaacannnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagaga 234  Q
      ||||||||||||||||||||   |||||||| |||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||     
T  21689132 tgaagaggacaggtataaaaatcatttaaagtggaagtgtaatatttt----aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagc 21689227  T
Q  235 atgaaaat 242  Q
    ||||||||    
T  21689228 atgaaaat 21689235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 21791645 - 21791845
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    ||||||||  |||| |||||||||||||||||||||||| |||||||||| || |  ||||| |    ||||| | || ||| |||||||||||||| |     
T  21791645 aaaagcaaatatcccttttccatgaattttacttttcttctccattgagttaactggtggacgtg---tagttcgttccgagaacaagttactttagcag 21791741  T
Q  136 caaagaggacaggtataaaaatatattaaagtg-aagtgtaacannnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagaga 234  Q
      ||||||||||||||||||||  ||||||||| |||||||| |        |||||||||||||||||||||||||||| ||||||||||||||| ||     
T  21791742 tgaagaggacaggtataaaaatcaattaaagtggaagtgtaatatttt----aagcaagcatatttacttatcttgttcagtaggtaaaggtttgaaagc 21791837  T
Q  235 atgaaaat 242  Q
    ||||||||    
T  21791838 atgaaaat 21791845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 21651734 - 21651806
Alignment:
Q  38 aagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttg 110  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||    
T  21651734 aagcaaagatcctttttccatgaattttacatttcttgtccattgagtaaagtggtagacattatatagtttg 21651806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 21791512 - 21791567
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21791512 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaat 21791567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 21784566 - 21784635
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatata 105  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  21784566 aaaagcaaatatcctttttccgtgaattttacttttcttgtccaatgagtaaagtgatggacattatata 21784635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 21622745 - 21622813
Alignment:
Q  107 tttgctctgaggacaagttactttagtaacaaagaggacaggtat-aaaaatatattaaagtgaagtgt 174  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  21622745 tttgttctgaggacaagttactttagtaaaaaagaggacaggtataaaaaatctattaaagtgaagtgt 21622813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 21663698 - 21663758
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatgga 96  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  21663698 aaaagcaatgatcctatttccatgaattttacttttcttgtccattgagcaaagtgatgga 21663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 21663875 - 21663923
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaa 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21663875 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaa 21663923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 21787953 - 21788056
Alignment:
Q  138 aagaggacaggtataaaaatatattaaagt-gaagtgtaacannnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaat 236  Q
    ||||||||||||||||||||  |||||||| ||||||||| |        ||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  21787953 aagaggacaggtataaaaatcgattaaagttgaagtgtaagattatttt-aagcaagcatatttagttatcttgttcattaggtaaaggtttgagagcat 21788051  T
Q  237 gaaaa 241  Q
    |||||    
T  21788052 gaaaa 21788056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 21725571 - 21725639
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 104  Q
    ||||||||  ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  21725571 aaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21725639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 21784691 - 21784746
Alignment:
Q  46 atcctttttccatgaattttacttttcttgtccattgagtaaagttatggacatta 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  21784691 atcctttttccgtgaattttacttttcttgtccattgagtaaagtgatgaacatta 21784746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 21771645 - 21771703
Alignment:
Q  46 atcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 104  Q
    ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  21771645 atcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21771703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 21704425 - 21704470
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaaggtttgaga 232  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  21704425 aagcaagcatatttagttatcttgttcattaggtaaaggtttgaga 21704470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 21622830 - 21622873
Alignment:
Q  199 ttacttatcttgttcattaggtaaaggtttgagagaatgaaaat 242  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  21622830 ttacttatcttgttcattaggtaaaggtttgagagcatgaaaat 21622873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 21639468 - 21639523
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaat 242  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||    
T  21639468 aagcaagcatatttacttatcttgttcattaggtaaagtttcaagagcatgaaaat 21639523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 21651859 - 21651914
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaat 242  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||    
T  21651859 aagcaagcatatttacttatcttgttaattaggtaaaggtttgtgagcatggaaat 21651914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 21991408 - 21991463
Alignment:
Q  37 aaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagtta 92  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  21991408 aaagcaaatatcctttttccatgaatttcacttttcttgtctattgagtaaagtta 21991463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 21771759 - 21771796
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaag 224  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21771759 aagcaagcatatttacttatcttgttcattaggtaaag 21771796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 21785163 - 21785200
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaag 224  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21785163 aagcaagcatatttacttatcttgttcattaggtaaag 21785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 21622693 - 21622744
Alignment:
Q  37 aaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaa 88  Q
    ||||||| ||| || ||||||||||||||||||||||||||||| |||||||    
T  21622693 aaagcaaagatactatttccatgaattttacttttcttgtccatcgagtaaa 21622744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 21787911 - 21787949
Alignment:
Q  61 attttacttttcttgtccattgagtaaagttatggacat 99  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  21787911 attttacttttcttgtccattgagtaaagtgatggacat 21787949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 21725694 - 21725731
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaag 224  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21725694 aagcacgcatatttacttatcttgttcattaggtaaag 21725731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 21639321 - 21639404
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaa 122  Q
    |||||||| |||||||||| ||| |||||||||| | |||| |||||||||||||  |||||   |||||||||| | |||||||||    
T  21639321 aaaagcaaagatccttttttcattaattttacttattttgtacattgagtaaagtggtggac---atatagtttgttatgaggacaa 21639404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 21791419 - 21791453
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttt 70  Q
    |||||||| ||||||||||||||||||||||||||    
T  21791419 aaaagcaaagatcctttttccatgaattttacttt 21791453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 21740895 - 21740931
Alignment:
Q  188 agcaagcatatttacttatcttgttcattaggtaaag 224  Q
    |||||||||||||||||||||| |||| |||||||||    
T  21740895 agcaagcatatttacttatcttcttcaataggtaaag 21740931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 34209 - 34277
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 104  Q
    ||||||||  ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  34209 aaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 34277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 34332 - 34369
Alignment:
Q  187 aagcaagcatatttacttatcttgttcattaggtaaag 224  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  34332 aagcacgcatatttacttatcttgttcattaggtaaag 34369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University