View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_361 (Length: 241)
Name: NF6864A_low_361
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_361 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3642395 - 3642159
Alignment:
| Q |
1 |
atgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactgccagagaagtttcaacaaggaaaatcggaacca |
100 |
Q |
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| T |
3642395 |
atgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactgccggagaagtttcaacaaggaaaatcggaacca |
3642296 |
T |
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| Q |
101 |
ttgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatgatattctt |
200 |
Q |
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| T |
3642295 |
ttgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatgatattctt |
3642196 |
T |
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| Q |
201 |
gaatgaattgtcattgacgacttgtataacaattatg |
237 |
Q |
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| T |
3642195 |
gaatgaattgtcattgacgacttgtataacaattatg |
3642159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9806860 - 9806801
Alignment:
| Q |
1 |
atgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagta |
60 |
Q |
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||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
9806860 |
atgaagctgttaaccttatgattatctcaagattcatttgttgtctcaaattataaagta |
9806801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 10606872 - 10606935
Alignment:
| Q |
130 |
ttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatga |
193 |
Q |
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| T |
10606872 |
ttcagctgccttgtttagtttattccaattaatatccaggtccttttaactctggcactgatga |
10606935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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