View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_362 (Length: 240)
Name: NF6864A_low_362
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_362 |
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Alignment Details
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 31133768 - 31133640
Alignment:
| Q |
71 |
agttgactatttcagacgtatatatgccgcctcctgaaaaagaaataaaaaagaaagaatggannnnnnnnnnnnngtttgtttgttgtctatttctttc |
170 |
Q |
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| T |
31133768 |
agttgactatttcagacgtatatatgcc---tcctgaaaaagaaataaaaaataaagaaaaaaaaaattat-----gtttgtttgttgtctatttgtttc |
31133677 |
T |
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| Q |
171 |
atagcgtag-gtgtgtttgatttcctgtttgcaatat |
206 |
Q |
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| T |
31133676 |
atagcgcagtgtgtgtttgatttcctgtttgcaatat |
31133640 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 31133838 - 31133807
Alignment:
| Q |
1 |
taagtaaatagtggattggagaatgtaatctc |
32 |
Q |
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| T |
31133838 |
taagtaaatagtggattggagaatgtaatctc |
31133807 |
T |
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