View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_368 (Length: 240)
Name: NF6864A_low_368
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_368 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 21205783 - 21205553
Alignment:
| Q |
1 |
gccggtatagttgaatggattcaaaggtttaattgggaaatcagtggtgtaaattccattgttttgtccaaagaaatgggattgaagaagtgctgtagtt |
100 |
Q |
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| T |
21205783 |
gccggtatagttgaatggattcaaaggtttacttgggaaatcagtggtgtaaattccattgttttgtccaaagaaatgggattgaagaagtgctgtagtt |
21205684 |
T |
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| Q |
101 |
ggcattgtgaaagatacattgttcactgatgccacaaacattgctccattgagtccctgacaagtttggttgctttgacaagggttagtaccaatgccta |
200 |
Q |
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| T |
21205683 |
ggcattgtgaaagatacattgttcattgatgccacaaacattgttccattgagtccctgacaagtttggttgctttgacaagggttagtaccaatgccta |
21205584 |
T |
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| Q |
201 |
ctgtgaagaaaaagtgtttatcgatattctt |
231 |
Q |
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| T |
21205583 |
ctgtgaagaaaaagtgtttatcgattttctt |
21205553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21854013 - 21853789
Alignment:
| Q |
1 |
gccggtatagttgaatggattcaaaggtttaattgggaaatcagtggtgtaaattccattgttttgtccaaagaaatgggattgaagaagtgctgtagtt |
100 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |
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| T |
21854013 |
gccggtatagttgaatggattcataggtttacttgggaaatcagtggtgtaaattccattgttttgtccaaagaaatgtgtctgaagaagtgctgtggtt |
21853914 |
T |
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| Q |
101 |
ggcattgtgaaagatacattgttcactgatgccacaaacattgctccattgagtccctgacaagtttgg---ttgctttgacaagggttagtaccaatgc |
197 |
Q |
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| T |
21853913 |
ggcattatgaaagaaacattgttcaccgatgccgcaaacattgttccattaggtccttgacatgtttggttcttgttttggcaaggatttgtaccaagac |
21853814 |
T |
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| Q |
198 |
ctactgtgaagaaaaagtgtttatc |
222 |
Q |
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| T |
21853813 |
ctactgtgaagaaaaagtgcttatc |
21853789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 21183246 - 21183088
Alignment:
| Q |
64 |
ttgtccaaagaaatgggattgaagaagtgctgtagttggcattgtgaaagatacattgttcactgatgccacaaacattgctccattgagtccctgacaa |
163 |
Q |
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||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
21183246 |
ttgtccagtgaagtgggattgaagaagtgcagtggttggcattgtgaaagatacattgttcactgatgctgcaaacattgttccattgggtccctgacat |
21183147 |
T |
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| Q |
164 |
gtttggttgctttgacaagggttagtaccaatgcctactgtgaagaaaaagtgtttatc |
222 |
Q |
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| T |
21183146 |
gtttggttgctttgacaagggttcgtaccaaggcctactgtgaagaaaaagtgtttatc |
21183088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 14156109 - 14156259
Alignment:
| Q |
33 |
ttgggaaatcagtggtgtaaattccattgttttgtccaaagaaatgggattgaagaagtgctgtagttggcattgtgaaagatacattgttcactgatgc |
132 |
Q |
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|||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||| ||| ||| | || ||| ||||||||||| |||||||| |
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| T |
14156109 |
ttgggaaatcaggagtgtaaactccattagattgtccaaagaaatgagattgaagaagtgttgtgtttgagagtgagaatgatacattgtttactgatgc |
14156208 |
T |
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| Q |
133 |
cacaaacattgctccattgagtccctgacaagtttggttgctttgacaagg |
183 |
Q |
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||| ||||| |||| || || ||||| ||||||||||| | |||||||| |
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| T |
14156209 |
tgcaatcattgttccactgggttcctgagaagtttggttgttctgacaagg |
14156259 |
T |
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