View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_371 (Length: 239)
Name: NF6864A_low_371
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_371 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 54793816 - 54793596
Alignment:
| Q |
11 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793816 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54793717 |
T |
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| Q |
111 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54793716 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctca |
54793617 |
T |
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| Q |
211 |
tcaaggtctcccattcttttc |
231 |
Q |
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||||||||||||||||||||| |
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| T |
54793616 |
tcaaggtctcccattcttttc |
54793596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 52286496 - 52286277
Alignment:
| Q |
12 |
gcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttc |
111 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||| |
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| T |
52286496 |
gcataactactgcaaaaacacagagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttc |
52286397 |
T |
|
| Q |
112 |
acattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcat |
211 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||| || |
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| T |
52286396 |
acattctcctgccaaaaagagcaaagctccatggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgat |
52286297 |
T |
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| Q |
212 |
caaggtctcccattcttttc |
231 |
Q |
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|||||||||||||||||||| |
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| T |
52286296 |
caaggtctcccattcttttc |
52286277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 54775823 - 54775932
Alignment:
| Q |
11 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775823 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54775922 |
T |
|
| Q |
111 |
cacattctcc |
120 |
Q |
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||||| |||| |
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| T |
54775923 |
cacatgctcc |
54775932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 801656 - 801450
Alignment:
| Q |
15 |
tagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcaca |
114 |
Q |
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|||| ||| ||||||||||||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
801656 |
tagccactccaaaaacacagagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcaca |
801557 |
T |
|
| Q |
115 |
ttctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaa |
214 |
Q |
| |
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|| |||||||| | |||||||||||| | |||||| ||||||||||| || |||| |||||||||||||||| | | |||||||||||||| |||| |
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| T |
801556 |
ttttcctgccataaagagcaaagctcaacggcctttatcccagcttcatc---agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaa |
801460 |
T |
|
| Q |
215 |
ggtctcccat |
224 |
Q |
| |
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|||||||||| |
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| T |
801459 |
ggtctcccat |
801450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 54775950 - 54775985
Alignment:
| Q |
196 |
acaaaaaccttctcatcaaggtctcccattcttttc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattcttttc |
54775985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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