View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_374 (Length: 239)

Name: NF6864A_low_374
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_374
NF6864A_low_374
[»] chr2 (17 HSPs)
chr2 (15-227)||(8579553-8579765)
chr2 (15-230)||(9061204-9061419)
chr2 (135-230)||(17566146-17566241)
chr2 (16-85)||(9364511-9364580)
chr2 (106-230)||(10347740-10347864)
chr2 (105-230)||(8573568-8573693)
chr2 (15-85)||(7115835-7115905)
chr2 (188-230)||(7611976-7612018)
chr2 (15-85)||(9284380-9284450)
chr2 (188-230)||(9364665-9364707)
chr2 (107-164)||(9291899-9291956)
chr2 (15-84)||(10335738-10335807)
chr2 (105-148)||(9274475-9274518)
chr2 (127-230)||(12018951-12019054)
chr2 (14-76)||(8573725-8573787)
chr2 (188-230)||(9065656-9065698)
chr2 (15-76)||(9291804-9291865)
[»] chr3 (2 HSPs)
chr3 (15-230)||(39427495-39427722)
chr3 (105-230)||(37462443-37462568)
[»] chr4 (3 HSPs)
chr4 (103-230)||(561174-561301)
chr4 (16-81)||(561066-561131)
chr4 (190-230)||(26574900-26574940)
[»] chr5 (2 HSPs)
chr5 (103-230)||(36224364-36224497)
chr5 (28-84)||(36224295-36224351)
[»] chr1 (5 HSPs)
chr1 (15-77)||(29423147-29423209)
chr1 (15-85)||(29453494-29453564)
chr1 (103-230)||(29443384-29443511)
chr1 (15-77)||(29467978-29468040)
chr1 (18-77)||(29443519-29443578)
[»] chr7 (4 HSPs)
chr7 (18-76)||(45243555-45243613)
chr7 (18-76)||(45230293-45230351)
chr7 (108-230)||(45237907-45238029)
chr7 (108-230)||(45243656-45243778)
[»] chr8 (1 HSPs)
chr8 (15-72)||(41966911-41966968)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 8579765 - 8579553
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcaccttttacttccaacag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8579765 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagattaccttttacttccaacag 8579666  T
Q  115 aaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 214  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8579665 aactttacttctatcactagaataacacaaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 8579566  T
Q  215 ctaaatccatatt 227  Q
    |||||||||||||    
T  8579565 ctaaatccatatt 8579553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 9061419 - 9061204
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatctctatagagatcaccttttacttccaacag 114  Q
    ||||||||||||||| |||| || |||||| |||||| |||||||||||||||||||||||| ||  |  | |||  |  | |   ||| ||||||||||    
T  9061419 aattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttcctaagagttttatccaagttaggatttgcttccaacag 9061320  T
Q  115 aaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatct 214  Q
    ||  |||| || |||||||||||||||||| ||| ||||| |   |||||||  |||||| ||||| |   | |||||||| | ||||||||||||||||    
T  9061319 aaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaactatct 9061220  T
Q  215 ctaaatccatattctt 230  Q
    ||| ||||||| ||||    
T  9061219 ctagatccatagtctt 9061204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 17566241 - 17566146
Alignment:
Q  135 aataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatctctaaatccatattctt 230  Q
    |||||||||||||||||||| || |||||||| || |||| | | | ||  | || |||||||||||||||||| |||||||||||||||||||||    
T  17566241 aataacataaaggcttcaaatatatcaaaggtatactgaaacgccactcgcccaaggtaaacaatttacaccaattatctctaaatccatattctt 17566146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 9364511 - 9364580
Alignment:
Q  16 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 85  Q
    ||||||||||||| |||||| |||||| | |||||| |||||||| ||||||||||||||||||| ||||    
T  9364511 attaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttcttacgatct 9364580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 10347740 - 10347864
Alignment:
Q  106 ttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacac 205  Q
    |||||||||||  ||||||| |||||||||||||||||  ||| ||||  || ||||||||  || ||| ||||| ||  | | |||||| | |||||||    
T  10347740 ttccaacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacac 10347839  T
Q  206 caactatctctaaatccatattctt 230  Q
    |||||||||||| ||||||||||||    
T  10347840 caactatctctacatccatattctt 10347864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 8573693 - 8573568
Alignment:
Q  105 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttaca 204  Q
    ||||||||||||  ||||||| |||||||||||||| ||||||| || ||||| | ||| ||  | |||| ||||| |   | |||||||| | ||||||    
T  8573693 cttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttaca 8573594  T
Q  205 ccaactatctctaaatccatattctt 230  Q
    ||||||||||||| | ||||||||||    
T  8573593 ccaactatctctagaaccatattctt 8573568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 7115905 - 7115835
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 85  Q
    ||||||||||||||| ||||||| |||||| ||| || || | ||||||||||| ||||||| ||||||||    
T  7115905 aattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatct 7115835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 7611976 - 7612018
Alignment:
Q  188 aaagtaaacaatttacaccaactatctctaaatccatattctt 230  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  7611976 aaagtaaacaatttacaccaactatcttttaatccatattctt 7612018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 9284450 - 9284380
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 85  Q
    ||||||||||||||| |||| || ||||||  ||||| || | ||||||||||| ||||||||||||||||    
T  9284450 aattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatct 9284380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 9364665 - 9364707
Alignment:
Q  188 aaagtaaacaatttacaccaactatctctaaatccatattctt 230  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  9364665 aaagtaaacaatttacaccaactatcttttaatccatattctt 9364707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 9291899 - 9291956
Alignment:
Q  107 tccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaag 164  Q
    ||||||||||  ||||||| ||| |||||||||||||||||| |||||||| ||||||    
T  9291899 tccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag 9291956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 10335738 - 10335807
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 84  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||| ||||||||||||    
T  10335738 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttcttacaatc 10335807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 9274475 - 9274518
Alignment:
Q  105 cttccaacagaaatttacttctatcactagaataacataaaggc 148  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||    
T  9274475 cttccaacagaaccttacttccatcactagaataacataaaggc 9274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 12019054 - 12018951
Alignment:
Q  127 atcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacaccaactatctctaaatccatat 226  Q
    |||||| ||||||| ||||||  ||||| |||| ||||||  |  ||| ||||| |||   |||||||| | ||||||||||||||||||| ||||||||    
T  12019054 atcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatccatat 12018955  T
Q  227 tctt 230  Q
    ||||    
T  12018954 tctt 12018951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 8573787 - 8573725
Alignment:
Q  14 caattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 76  Q
    |||||||||||||||| |||| || | |||| |||||| || | |||||||||||||||||||    
T  8573787 caattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 9065698 - 9065656
Alignment:
Q  188 aaagtaaacaatttacaccaactatctctaaatccatattctt 230  Q
    |||||||| | ||||||||||||||||||| ||||||||||||    
T  9065698 aaagtaaaaagtttacaccaactatctctagatccatattctt 9065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 9291804 - 9291865
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 76  Q
    ||||||||||||||| |||| || ||| || |||||| || | |||||||||||||||||||    
T  9291804 aattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 39427495 - 39427722
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttctt---acaatctctatagagatcacc------ttttac 105  Q
    |||||||||||| | ||||| | |||||||  | ||||||||||| ||||||||||||||||||   |  ||| || | || ||||||      ||||||    
T  39427495 aattaggaattcttggaacataggtaactttataacttttgagataataccaaaacagcttcttcttaggatcactcttgaaatcacccctaaattttac 39427594  T
Q  106 ttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcc---tcaaaagtaaacaattta 202  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||  | ||||||  |||||| ||| | |||    |||||||||||||||||    
T  39427595 ttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaattta 39427694  T
Q  203 caccaactatctctaaatccatattctt 230  Q
    |||||||||| |||| ||||||||||||    
T  39427695 caccaactatatctatatccatattctt 39427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 37462443 - 37462568
Alignment:
Q  105 cttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttaca 204  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||| |||||||| ||||||||  | |||| ||||| |  || | |||| | | ||||||    
T  37462443 cttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttaca 37462542  T
Q  205 ccaactatctctaaatccatattctt 230  Q
    ||||||||||||| ||||||||||||    
T  37462543 ccaactatctctagatccatattctt 37462568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 561174 - 561301
Alignment:
Q  103 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaattta 202  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||| | | | | |||||| || ||||  ||   ||||| ||||||||||||  |    
T  561174 tacttccaacagaactttacttctatcaccagaataacctaaaggcttccatggtgtaaaaggtctactgaaaaacacttcctccaaagtaaacaataca 561273  T
Q  203 caccaactatctctaaatccatattctt 230  Q
    ||||||||||||||||||||||||||||    
T  561274 caccaactatctctaaatccatattctt 561301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 561066 - 561131
Alignment:
Q  16 attaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttaca 81  Q
    ||||||||||||| ||||||| ||| ||  || ||||||||||||||||||||||| ||| |||||    
T  561066 attaggaattcctggaacacaggtagctcttttacttttgagatcataccaaaacaactttttaca 561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 26574900 - 26574940
Alignment:
Q  190 agtaaacaatttacaccaactatctctaaatccatattctt 230  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  26574900 agtaaaaagtttacaccaactatctctacatccatattctt 26574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 36224364 - 36224497
Alignment:
Q  103 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctc------aaaggtttattgaagcacgaatcctcaaaagtaaac 196  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||      ||||||  || |||  || | |||   |||||||||    
T  36224364 tacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaatttaaaaggtgaatcgaaataccattcccacaaagtaaac 36224463  T
Q  197 aatttacaccaactatctctaaatccatattctt 230  Q
    ||||||||||||||||||||||||||||||||||    
T  36224464 aatttacaccaactatctctaaatccatattctt 36224497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 36224295 - 36224351
Alignment:
Q  28 ttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatc 84  Q
    ||||||||| |||||||| | ||||||||||| ||||||||||  ||||||| ||||    
T  36224295 ttgaacacaggtaacttcataacttttgagataataccaaaactccttcttagaatc 36224351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 29423147 - 29423209
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 77  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  29423147 aattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttct 29423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 29453564 - 29453494
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttcttacaatct 85  Q
    ||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  29453564 aattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttctcacaatct 29453494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 29443511 - 29443384
Alignment:
Q  103 tacttccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaattta 202  Q
    ||||| ||||||||   |||||||||| || ||||||| ||||  | |||||| ||||||||||  | |||| ||||| ||  | |||||||| | ||||    
T  29443511 tacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagttta 29443412  T
Q  203 caccaactatctctaaatccatattctt 230  Q
    ||||| ||||||||| ||||||||||||    
T  29443411 caccagctatctctacatccatattctt 29443384  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 29468040 - 29467978
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 77  Q
    ||||||||||||||| |||| || |||| | |||||| ||||||||||||||||||| |||||    
T  29468040 aattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttct 29467978  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 29443578 - 29443519
Alignment:
Q  18 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 77  Q
    |||||||||||| |||| || ||||   |||||| |||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 45243555 - 45243613
Alignment:
Q  18 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 76  Q
    ||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 45230293 - 45230351
Alignment:
Q  18 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 76  Q
    |||||||||||||||||  |||||||| |||||| |||| |||||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 45237907 - 45238029
Alignment:
Q  108 ccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacacca 207  Q
    ||||||||| |||||||| ||| || ||||||||||||||| ||||  || ||| | |   |||||| ||||| ||  | |||||||| | |||||||||    
T  45237907 ccaacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacacca 45238006  T
Q  208 actatctctaaatccatattctt 230  Q
    |||||||||| ||||||||||||    
T  45238007 actatctctagatccatattctt 45238029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 45243656 - 45243778
Alignment:
Q  108 ccaacagaaatttacttctatcactagaataacataaaggcttcaaagatctcaaaggtttattgaagcacgaatcctcaaaagtaaacaatttacacca 207  Q
    ||||||||| |||||||| |||||| ||||||||||||||| ||||||||  |||| |   |||||| ||||| |   | |||||||| | |||||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T
Q  208 actatctctaaatccatattctt 230  Q
    | |||||||| | ||||||||||    
T  45243756 aatatctctagaaccatattctt 45243778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 41966968 - 41966911
Alignment:
Q  15 aattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacag 72  Q
    ||||||||||||||| |||| |||||| || |||||| || | |||||||||||||||    
T  41966968 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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