View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_378 (Length: 238)
Name: NF6864A_low_378
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_378 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24639591 - 24639829
Alignment:
| Q |
1 |
gtagacaagaatttcagatataggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattatttttacat |
99 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24639591 |
gtagacaagaatttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgacat |
24639690 |
T |
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| Q |
100 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
199 |
Q |
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| T |
24639691 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
24639790 |
T |
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| Q |
200 |
caaattgtgctcattggtttggttgatttgagctttcat |
238 |
Q |
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| T |
24639791 |
caaattgtgctcattggtttggttgatttgagctttcat |
24639829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 52491175 - 52490937
Alignment:
| Q |
1 |
gtagacaagaatttcagatataggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattatttttacat |
99 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52491175 |
gtagacaagaatttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgacat |
52491076 |
T |
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| Q |
100 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
199 |
Q |
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| T |
52491075 |
gcaaatttgacaacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcca |
52490976 |
T |
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| Q |
200 |
caaattgtgctcattggtttggttgatttgagctttcat |
238 |
Q |
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| T |
52490975 |
caaattgtgctcattggtttggttgatttgagctttcat |
52490937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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