View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_379 (Length: 238)
Name: NF6864A_low_379
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_379 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 9417038 - 9417223
Alignment:
| Q |
13 |
tatggaatcatatgcgtgacttcaacttcaataatctttttgtttgaacatttctttttacaaaaattgaagagttgaattttaaaactatataaaaaag |
112 |
Q |
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| T |
9417038 |
tatggaatcatatgcgtgacttcaacttcaataatctttttgtttgaacatttctttttacaaaaattgaagagttgaattttaaaactatataaaaaag |
9417137 |
T |
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| Q |
113 |
ttagtgatattactgtatggctaccaatttcatgcaatatgaatacaatattaggttagacacaatgaccctatgaatttgatcat |
198 |
Q |
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| T |
9417138 |
ttagtaatattactgtatggctaccaatttcatgcaatatgaatacaatattatgttagacacaatgaccctatgaatttgatcat |
9417223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 1861641 - 1861607
Alignment:
| Q |
191 |
ttgatcatcaatatcatcaaaaccatgttgaaagt |
225 |
Q |
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| T |
1861641 |
ttgatcatcaatatcatcaaaaccatgttgaaagt |
1861607 |
T |
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