View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_385 (Length: 237)
Name: NF6864A_low_385
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_385 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 43703564 - 43703392
Alignment:
| Q |
21 |
gatggaccaatcacaagataagaatctcacaagacaaactcaactagtattttgattcctcaatgtaggtggttgaaccaacaaaagtaattcattatca |
120 |
Q |
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| T |
43703564 |
gatggaccaatcacaagataagaatctcacaagacaaactcaactagtattttgattcctcaatgtagatggttgaac-aacaaaagtaattcattatca |
43703466 |
T |
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| Q |
121 |
atacgaaaaagagtgtgcatttgggcaagtgttcgataaaggtggttttagatgaacataagtttataaaattg |
194 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43703465 |
atacgaaaaaaagtgtgcatttgggcaagtgttcgataaaggtggttttagataaacataagtttataaaattg |
43703392 |
T |
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