View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_395 (Length: 235)
Name: NF6864A_low_395
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_395 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 3176352 - 3176149
Alignment:
| Q |
14 |
tggacatcagctcttataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaag |
113 |
Q |
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| T |
3176352 |
tggacattagctcttataaatagatcaactctcacactctctcaacacaccaacatcactcaactccctctctttcaaggttacattctcttaaaccaaa |
3176253 |
T |
|
| Q |
114 |
aaatggccaaaactttagtattagtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaag |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176252 |
aaatggccaaaactttagtattggtttttctctttctccaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaag |
3176153 |
T |
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| Q |
214 |
tcca |
217 |
Q |
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|||| |
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| T |
3176152 |
tcca |
3176149 |
T |
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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 24541537 - 24541347
Alignment:
| Q |
28 |
tataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaa-accaagaaatggccaaaac |
126 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || || ||||||| ||||| |
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| T |
24541537 |
tataaatagatcaactctcacactctctcaacacatcaacatcactcatctccctctctttcaaggttaccttctcttaacacaaaaaaatggcgaaaac |
24541438 |
T |
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| Q |
127 |
tttagtattagtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtcca |
217 |
Q |
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| T |
24541437 |
tctcttattgttttttctctttctccaaataacctctttcatagcatttgctgaaaagctagaaactcttcatcacaaaccagcaactcca |
24541347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 41525460 - 41525264
Alignment:
| Q |
22 |
agctcttataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaagaaatggcc |
121 |
Q |
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||||| |||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||| |||| ||| | |||||||||| ||| |||||||| |
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| T |
41525460 |
agctcctataaatagatcaactctcacactctctcaacccaccaacattacttctctccctctctttcaaagttgcattctcttaaaacaaaaaatggcc |
41525361 |
T |
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| Q |
122 |
aaaactttagtatt-agtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtcca |
217 |
Q |
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| T |
41525360 |
aaaactctagtattgtttttttctcttactccaaataacctccttcatagcatttgctgaagagctagaaactcttcatcacaaaccagcaactcca |
41525264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 20963741 - 20963921
Alignment:
| Q |
38 |
tcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaagaaa--tggccaaaactttagtatt |
135 |
Q |
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|||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||| | ||||||||| ||| ||| ||||||||||| | ||||| |
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| T |
20963741 |
tcaactctcacactctctcaacacaccaacatcaatcctctccctctctttcaaggtt-ctttctcttaacacaaaaaaaatggccaaaactctggtatt |
20963839 |
T |
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| Q |
136 |
agtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtcca |
217 |
Q |
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|||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
20963840 |
gttttttctctttctccaaataacctctttcatagcatttactgaagagctagaaacttttcataacaaaccagcaactcca |
20963921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 14675257 - 14675187
Alignment:
| Q |
138 |
tttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaacca |
208 |
Q |
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|||||||||| ||| |||||||||||||| | | || || |||||||| |||||| |||||||||||||| |
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| T |
14675257 |
tttttctcttactccaaataacctctttcgttgtgtttgcggaagagcttgaaactcttcatcacaaacca |
14675187 |
T |
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