View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_401 (Length: 234)
Name: NF6864A_low_401
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_401 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 31503178 - 31502955
Alignment:
| Q |
11 |
cacagacccggtcaaaggtagagtttgatttacaatgatatgagaagctgccttgaatctagattatgtaacacatggctaatgaatttggtagcaaaag |
110 |
Q |
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| T |
31503178 |
cacagacccggtcaaaggtagagtttgatttacaatgatatgagaagctgccttgaatctagattatgtaacacatggctaatgaatttggtagcaaaag |
31503079 |
T |
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| Q |
111 |
gaaaaaatttaataccaaccgtacctggcttaaaagatacccatccaaacatataaataaaaaatagaaggaacatatacgaagaaccaattatacattg |
210 |
Q |
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| T |
31503078 |
gaaaaaatttaataccaaccgtacctggcttaaaagttacccatccaaacatataaataaaaaatagaaggaacatatccgatgaaccaattatacattg |
31502979 |
T |
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| Q |
211 |
atacatacataaaagaatcagaga |
234 |
Q |
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| T |
31502978 |
atacatacataaaagaatcagaga |
31502955 |
T |
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