View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_402 (Length: 234)
Name: NF6864A_low_402
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_402 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 5847818 - 5847998
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||| || |||||||| |
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| T |
5847818 |
ttatgcaattcggtgatacacttgtttctggaactggaaggtttgaagcaggatttttctactttggagatccacaacgccaatacttcggtatatggta |
5847917 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaact |
200 |
Q |
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||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5847918 |
caagaacatatcaccaaggactattgtgtgggttgccaatagaaatactcctgtacgtaactcaacagcaatgctgaaact |
5847998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 5853125 - 5853317
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
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||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||| |||||||| ||| ||||||| || |||||||| |
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| T |
5853125 |
ttatgcaattcggtgatactcttgtttctgcagctgagaggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggta |
5853224 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaacttgctgatcaagg |
212 |
Q |
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| T |
5853225 |
caagaatatatcaccaagcactattgtgtgggttgccaatagaaatactcctgtacaaaactcaactgcaatgatgaaacttactgatcaagg |
5853317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 5485926 - 5485745
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
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||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||| || |||||||| |
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| T |
5485926 |
ttatgcaattcggtgatacgcttgtctctgcagctggaaggtttgaagcaggatttttcaactttggcgattcacaacatcaatacttcggtatatggta |
5485827 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaactt |
201 |
Q |
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|||||| || | ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
5485826 |
caagaatatatcaccaaggactattgtatgggttgccaatagaaatactcctgcacaaaactcaacagcaatgctgaaactt |
5485745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 5801421 - 5801601
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
| |
|
||||||||| ||||||||| |||||||||| |||||||| || |||||| ||||||||||||||||| ||||| || ||| ||||||| || |||||||| |
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| T |
5801421 |
ttatgcaatacggtgatactcttgtttctgcagctggaatgtatgaagccggatttttcaactttggcgattcccaacgccaatacttcggtatatggta |
5801520 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaact |
200 |
Q |
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| T |
5801521 |
caagaagatatcaccaaggactattgtgtgggttgccaatagaaatactcctgtacataactcagcagcaatgctgaaact |
5801601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 5491347 - 5491169
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||| |||||||| ||| ||||||| || |||||||| |
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| T |
5491347 |
ttatgcaatacggtgatactcttgtttctgcagctgagaggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggta |
5491248 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaa |
198 |
Q |
| |
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| T |
5491247 |
caagaacatatcaccaaggactattgtgtgggttgccaatagaaatactcctacacaaaactcaacagcaatgctgaaa |
5491169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 20344772 - 20344592
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||| ||| ||||||| || |||||||| |
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| T |
20344772 |
ttatgcaatacagtgatacacttgtttctggagatggattgtttgaagcaggatttttcaactttagagatccactacgccaatacttcggtatatggta |
20344673 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaact |
200 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
20344672 |
caagaacatatcaccaaggactattgtgtgggttgccaatagaaatacgcctgtacaaaactcaacagcgatgctgaaact |
20344592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 5504142 - 5503961
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
| |
|
||||||||| ||||||||| |||||||||| |||||||| || |||||||||||||||||||||||| |||||||| ||| ||||||| || |||||||| |
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| T |
5504142 |
ttatgcaatacggtgatactcttgtttctgcagctggaatgtatgaagcaggatttttcaactttggtgattcacaacgccaatacttcggtatatggta |
5504043 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaactt |
201 |
Q |
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|
||||||||| | |||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||||| |
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| T |
5504042 |
caagaacatatcgccaaggactattgtgtgggttgccaatagaaataccccgacacaaaactcaacagcaatgttgaaactt |
5503961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 5827100 - 5827261
Alignment:
| Q |
40 |
cttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggtacaagaacattttaccaaggg |
139 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||| | ||||||| |
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|
| T |
5827100 |
cttgtttcttcagctggaatgtatgaagcaggatttttcaactttggcgattcacagcgtcaatacttcggtatatggtacaagaacatatcaccaagga |
5827199 |
T |
|
| Q |
140 |
ctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaactt |
201 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
5827200 |
ctattgtgtgggttgctaatcgaaatactcctgtacaaaactcaacagcaatgctgaaactt |
5827261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 5456141 - 5455981
Alignment:
| Q |
40 |
cttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggtacaagaacattttaccaaggg |
139 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||||||| ||||||||| |||| ||| |||||||||| ||||||||||||||||| | ||||||| |
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| T |
5456141 |
cttgtttctgctgctggaacctttgaagcaggttttttcaattttggagatccacaacgccaatactttggtatatggtacaagaacatatcaccaagga |
5456042 |
T |
|
| Q |
140 |
ctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaact |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
5456041 |
caattgtgtgggttgccaatagaaatactcctgtacaaaactcaacagcaatgctgaaact |
5455981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 5526985 - 5526804
Alignment:
| Q |
20 |
ttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggta |
119 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||| | || ||||||||| |||||||||||||||||| |||| | ||||||| || |||||||| |
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| T |
5526985 |
ttatgcaatttggtgatactcttgtttctgcagctgggatgtatgaagcaggttttttcaactttggagatccacaacatcaatacttcggtatatggta |
5526886 |
T |
|
| Q |
120 |
caagaacattttaccaagggctattgtgtgggttgccaatagaaatactcctgtacataactcaacagcaatgctgaaactt |
201 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||||| |
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|
| T |
5526885 |
caagaacatatcgccaaggactattgtgtgggttgccaatagaaataccccgacacaaaactcaacagcaatgttgaaactt |
5526804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 5447558 - 5447410
Alignment:
| Q |
61 |
tttgaagcaggatttttcaactttggagattcacagcgcaaatactttggcatatggtacaagaacattttaccaagggctattgtgtgggttgccaata |
160 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||| ||| |||||||||| |||||||| || | ||||||||| ||| || |||||||||||||||||| |
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| T |
5447558 |
tttgaagcaggatttttcaattttggagatccacaacgccaatactttggtatatggtataacagcattttacctaggactgttgtgtgggttgccaata |
5447459 |
T |
|
| Q |
161 |
gaaatactcctgtacataactcaacagcaatgctgaaacttgctgatca |
209 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
5447458 |
gaaacacccctgtacaaaactcaacagcaatgctgaaactcactgatca |
5447410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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