View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_420 (Length: 230)
Name: NF6864A_low_420
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_420 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24637343 - 24637566
Alignment:
| Q |
1 |
gaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaagttaaaacagaaacacgagc |
100 |
Q |
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| T |
24637343 |
gaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaatttaaaacagaaacacgagc |
24637442 |
T |
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| Q |
101 |
agcatctatgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctc |
200 |
Q |
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| T |
24637443 |
agcatctatgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctc |
24637542 |
T |
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| Q |
201 |
cgacaaatgaaaaagcaaccaaat |
224 |
Q |
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| T |
24637543 |
cgacaaatgaaaaagcaaccaaat |
24637566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 24715918 - 24716010
Alignment:
| Q |
1 |
gaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaagttaaaacagaaa |
93 |
Q |
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| T |
24715918 |
gaaccatgcataacattaaaatgagcaagggatacataaaacaaataggcaccgcaattttttaaggaacccaaaactaatttaaaacagaaa |
24716010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 24716115 - 24716194
Alignment:
| Q |
140 |
aaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctccgacaaatgaaaaagcaaccaaat |
224 |
Q |
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|||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||| | | |||||||||||||||||| |
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| T |
24716115 |
aaattatgtttcagattcctttcaatcat-----ttataggaaataacagattgattcctcctatatatgaaaaagcaaccaaat |
24716194 |
T |
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