View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_435 (Length: 230)
Name: NF6864A_low_435
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_435 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21205942 - 21206152
Alignment:
| Q |
1 |
atttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgct |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21205942 |
atttggtaactacgattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgct |
21206041 |
T |
|
| Q |
101 |
atcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttcataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21206042 |
atcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcgaagaatgttttagttcactttcataa |
21206141 |
T |
|
| Q |
201 |
attaacaaaaa |
211 |
Q |
| |
|
||||||||||| |
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| T |
21206142 |
attaacaaaaa |
21206152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21183468 - 21183691
Alignment:
| Q |
1 |
atttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgct |
100 |
Q |
| |
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||||||||||||| ||||||||||||| || |||| ||||| ||||||||||| || || || || ||| ||||||| ||||||||||||||||||||| |
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| T |
21183468 |
atttggtaactacgattcaaataaggaccccaaaaactttaatcttgttgatcctgtcgagagaaacacaattggtgtcccatctggtggatgggttgct |
21183567 |
T |
|
| Q |
101 |
atcagattcctagcagataatccaggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttcataa |
200 |
Q |
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| T |
21183568 |
atcagattccttgcagataatcctggttggttcctagattattcgtcaaactatcaaaagtcattttggtttcaaagaatgttttagttcactttcataa |
21183667 |
T |
|
| Q |
201 |
attaacaaaaatgtctaattgtgt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
21183668 |
attaacaaaaatgtctaattgtgt |
21183691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21854172 - 21854304
Alignment:
| Q |
1 |
atttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgct |
100 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21854172 |
atttggtaactttgattcaaatagtgatccacaaaattttaatcttgttgatcctgttgaaaggaatacagttggtgttccatctggtggatgggttgct |
21854271 |
T |
|
| Q |
101 |
atcagattcctagcagataatccaggttggttc |
133 |
Q |
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|
|||||||||||||||||||||||||||| |||| |
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|
| T |
21854272 |
atcagattcctagcagataatccaggttagttc |
21854304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 22635406 - 22635329
Alignment:
| Q |
50 |
gatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
127 |
Q |
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|
||||| || ||||||||||| | |||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
22635406 |
gatcctgtcgaaaggaatactgctggtgttccagctggtggatgggttgctttgagattccttgcagataatccaggt |
22635329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 22603743 - 22603840
Alignment:
| Q |
34 |
aaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggt |
131 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| || ||||||||||| ||||||| |||||||| || ||||| | || |||||||||||||||| |
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|
| T |
22603743 |
aaaatttaatttggttgatcctgttgaaaggaacactgttggtgttcctgctggtggttgggttgccattagattttttgcggataatccaggttggt |
22603840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 21206167 - 21206195
Alignment:
| Q |
197 |
ataaattaacaaaaatgtctaattgtgtt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
21206167 |
ataaattaacaaaaatgtctaattgtgtt |
21206195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 4384465 - 4384554
Alignment:
| Q |
38 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
127 |
Q |
| |
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||||||||||||||||| ||||||||||| || |||||||| ||| ||||||| |||||||| || |||||| ||| |||||||||||| |
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| T |
4384465 |
tttaaccttgttgatcctgttgaaaggaacactgttggtgtaccagctggtggttgggttgccattagattcagagctgataatccaggt |
4384554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 24068937 - 24068848
Alignment:
| Q |
38 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
127 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||| ||| || |||||||| |||||||| || ||||||| || || ||||||||| |
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| T |
24068937 |
tttaatcttgttgatcctgttgagaggaatactgttgctgtgccttctggtggttgggttgcgatacgattccttgctgacaatccaggt |
24068848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 29554653 - 29554733
Alignment:
| Q |
47 |
gttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
127 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
29554653 |
gttgatcctgtggagagaaatacagttggtgttccatctggtggatggactgctatcagattcagggctgataatccaggt |
29554733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 25093265 - 25093364
Alignment:
| Q |
33 |
aaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggtt |
132 |
Q |
| |
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|||| ||||| ||||||||||| || || ||||||||||| ||||||||| |||| || ||| ||||||||||||| || |||||||||||| |||| |
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| T |
25093265 |
aaaagtttaatcttgttgatcctgtggagaggaatacagtaggtgttccagctggaggttggactgctatcagattcaaggctgataatccaggtaggtt |
25093364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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