View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_44 (Length: 408)
Name: NF6864A_low_44
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 3 - 402
Target Start/End: Complemental strand, 36603600 - 36603201
Alignment:
| Q |
3 |
tattctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcttcctaggtgg |
102 |
Q |
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| T |
36603600 |
tattctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcttcctaggtgg |
36603501 |
T |
|
| Q |
103 |
agccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactgga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603500 |
agccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactgga |
36603401 |
T |
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| Q |
203 |
atgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctgggtttgttgtgtataggtataaaccagattggtggcagc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
36603400 |
atgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctggttttgttgtgtataggtataagccagaatggtggcagc |
36603301 |
T |
|
| Q |
303 |
gtcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603300 |
gtcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
36603201 |
T |
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