View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_443 (Length: 230)
Name: NF6864A_low_443
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_443 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2577162 - 2576941
Alignment:
| Q |
1 |
gtatatcaacgtacacctactagtatgttgatatatttatatacatttatgcatataatcttgccccactaattgaaattttagattcctctttgtttta |
100 |
Q |
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| T |
2577162 |
gtatatcaacgtacccctactaggatgttgatatatttatatacatttatgcatataatcttgccccactaattaaaattttagattcctctttgtttta |
2577063 |
T |
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| Q |
101 |
tataagtatttagatgtatatatagaagnnnnnnnnnnttcctatgttgttttgatcttatgaataagcacttgattaaaagctgcttttaggagctaat |
200 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2577062 |
tataagtatttagatgtatatatagaag--aaaaaaaattcccatgttgttttgatcttatgaataagcacttgattaaaagctgcttttaggagctaat |
2576965 |
T |
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| Q |
201 |
tgatatttggagaaaccacatgtc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2576964 |
tgatatttggagaaaccacatgtc |
2576941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 2608846 - 2608761
Alignment:
| Q |
139 |
ttcctatgttgttttgatcttatgaataagcacttgattaaaagctgcttttaggagctaattgatatttggagaaaccacatgtc |
224 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
2608846 |
ttcctatgttattttgatcttatgaataagcacttaattaaaagctgcttttaggagcaaattgatatttagagaaaccacatgtc |
2608761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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