View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_445 (Length: 230)
Name: NF6864A_low_445
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_445 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 17432070 - 17432293
Alignment:
| Q |
7 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
106 |
Q |
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| T |
17432070 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
17432169 |
T |
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| Q |
107 |
tttgtagtcgatgaccccattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
206 |
Q |
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| T |
17432170 |
tttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
17432269 |
T |
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| Q |
207 |
atgtgagcatagttttgtcacttg |
230 |
Q |
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| T |
17432270 |
atgtgagcatagttttgtcacttg |
17432293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 17435943 - 17436166
Alignment:
| Q |
7 |
gttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactcatttggaacaata |
106 |
Q |
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| T |
17435943 |
gttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccggttatcggcatcaacggaagggtttggtcttaccactcattcggaacaata |
17436042 |
T |
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| Q |
107 |
tttgtagtcgatgaccccattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctcttgatggttcaa |
206 |
Q |
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| T |
17436043 |
tttgtcgttgatgaccccgtcatgttaagccctagtccattttcaactcaaattggaagggcacaaggtgtaattacagtgacatctctagatggtgcaa |
17436142 |
T |
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| Q |
207 |
atgtgagcatagttttgtcacttg |
230 |
Q |
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| T |
17436143 |
atgtgaacatagttttgtcacttg |
17436166 |
T |
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