View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_447 (Length: 230)
Name: NF6864A_low_447
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_447 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9329221 - 9329444
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaacgttggtgctgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9329221 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagacccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag |
9329320 |
T |
|
| Q |
101 |
gatggttgagtggaaccatggatttagttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt |
200 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329321 |
gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt |
9329420 |
T |
|
| Q |
201 |
tttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9329421 |
tttgaggtgaaggttagtgaagtt |
9329444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9283698 - 9283487
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaacgttggtgctgaaag |
100 |
Q |
| |
|
||||| ||| |||||| | |||| || | ||||||||| |||||||| ||||||||| || |||||||| |||||| |||| | | ||||||| |||||| |
|
|
| T |
9283698 |
aaagcaattgggccattgtagatggcgaggaggccgttacatgaaccaataagagccttgatgctgttaagcgtgaaaggatcgatgttggtggtgaaag |
9283599 |
T |
|
| Q |
101 |
gatggttgagtggaaccatggatttagttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt |
200 |
Q |
| |
|
|||||||||| || | |||||||| ||||| ||||| | ||||||||||||||||| ||| ||| | | |||||||| ||||| |||||||| | | |
|
|
| T |
9283598 |
gatggttgagcggtattatggatttggttaggttagggaaatcgagttggtagagattggtcttgtgacggaggatgagtttgaagttgaggga---act |
9283502 |
T |
|
| Q |
201 |
tttgaggtgaaggtt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9283501 |
tttgaggtgaaggtt |
9283487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 9275150 - 9275368
Alignment:
| Q |
8 |
tttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaacg----ttggtgctgaaaggat |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| || | || | ||| | |||||||||| |
|
|
| T |
9275150 |
tttggccattggagatagcaatgaggccgttacatgaacctataagagccatggtgctgttacgcgtgaaagaatcattgttgcttgctactgaaaggat |
9275249 |
T |
|
| Q |
104 |
ggttgagtggaaccatggatttagttagattaggaagatcgagttggtagag-atcggtattgagctgaaggatgaggttgaaattgagggaattatttt |
202 |
Q |
| |
|
|||||||| | | ||| |||| ||||| ||||| | || ||||| |||||| | ||| ||| | ||||| |||||||||||||||||||| ||||| |
|
|
| T |
9275250 |
ggttgagttgtattatgaatttggttaggttagggaaattgagttcgtagagtttgggtgttgtgttgaagaatgaggttgaaattgaggga---atttt |
9275346 |
T |
|
| Q |
203 |
tgaggtgaaggttagtgaagtt |
224 |
Q |
| |
|
|||| |||||||| ||||||| |
|
|
| T |
9275347 |
tgagatgaaggttgatgaagtt |
9275368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9316650 - 9316870
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaacgttggtgctgaaag |
100 |
Q |
| |
|
||||||||||| |||| ||| || || | |||||||| |||||||||| ||||||||| |||||||| |||||||||||| ||| |||||| |
|
|
| T |
9316650 |
aaagcgatttgaccattggaaatggcgagaaggccgttacatgaaccgagaagagccattatgctgttatacgtgacaggagc------tgtgttgaaag |
9316743 |
T |
|
| Q |
101 |
gatggttgagtggaaccatggatttagttagattagg---aagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaatt |
197 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | ||| | ||||| ||||||||| |||| ||| |||||||| | | |||||||||||| |
|
|
| T |
9316744 |
gatggttgagtggaatcatggatttcgttaggtcagggaaatcatcgatttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaatt |
9316843 |
T |
|
| Q |
198 |
atttttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
9316844 |
atttttgaggtgaaggttgatgaagtt |
9316870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7115160 - 7115101
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatg |
60 |
Q |
| |
|
|||||||||||||||| |||||| || | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
7115160 |
aaagcgatttggccattggagatggcgaggaggccgttacatgaaccgataagatccatg |
7115101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9357802 - 9357880
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgt---tgctgttacgcgtga |
76 |
Q |
| |
|
|||||||||| ||||| |||||| || | ||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
9357802 |
aaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacgcgtga |
9357880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 9060440 - 9060402
Alignment:
| Q |
186 |
attgagggaattatttttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
9060440 |
attgaggggattatttttgaggtaaaggttagtgaagtt |
9060402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37463120 - 37463191
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgc |
72 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
37463120 |
aaagcgatttggccattggagatagcgaggaggccgttacatgaaccgataagagccatggtgctgtcacgc |
37463191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 561966 - 562015
Alignment:
| Q |
172 |
aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
561966 |
aggatgaggttaaaattgagggagtt---tttgaggtgaaggttagtgaagtt |
562015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University