View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_471 (Length: 229)
Name: NF6864A_low_471
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_471 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 44515557 - 44515346
Alignment:
| Q |
18 |
ctcaatgtgtatattaccttcactcgttttacacattccctccaaccgttgacgtgcaaaacggtttactgcgtattgtgtagaaagctcaattggatct |
117 |
Q |
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| T |
44515557 |
ctcaatgtgtatattaccttcactcattttacacattccctccaaccgttgacgtgcaaaacggtttactacgtattgtgtagaaagctcaattggatct |
44515458 |
T |
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| Q |
118 |
tcaggcctaagggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacagacccctgttnnnnnnnntggtcatgagcaacaatagc |
217 |
Q |
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| T |
44515457 |
tcaggcctaagggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacagacccctgttaaaaaaaatggtcataagcaacaatagc |
44515358 |
T |
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| Q |
218 |
aagctagaacag |
229 |
Q |
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|||||||||||| |
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| T |
44515357 |
aagctagaacag |
44515346 |
T |
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