View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_474 (Length: 228)

Name: NF6864A_low_474
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_474
NF6864A_low_474
[»] chr1 (16 HSPs)
chr1 (5-227)||(13244695-13244917)
chr1 (97-224)||(13271474-13271601)
chr1 (13-224)||(13085911-13086122)
chr1 (96-224)||(12964052-12964180)
chr1 (88-224)||(30368285-30368421)
chr1 (20-224)||(13100812-13101015)
chr1 (13-227)||(13081039-13081253)
chr1 (88-224)||(13070353-13070489)
chr1 (88-224)||(13094278-13094414)
chr1 (18-224)||(13007009-13007215)
chr1 (18-224)||(13204268-13204474)
chr1 (96-221)||(19279348-19279473)
chr1 (88-224)||(13129707-13129843)
chr1 (88-224)||(13161400-13161536)
chr1 (14-227)||(13065387-13065600)
chr1 (97-156)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (128-219)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 13244917 - 13244695
Alignment:
Q  5 caactttgttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttc 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  13244917 caactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttc 13244818  T
Q  105 caccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  13244817 caccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattg 13244718  T
Q  205 aaagctatgaacttgtaagacgg 227  Q
    |||||||||||||||||||||||    
T  13244717 aaagctatgaacttgtaagacgg 13244695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 13271474 - 13271601
Alignment:
Q  97 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggac 196  Q
    |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  13271474 tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac 13271573  T
Q  197 ctgcattgaaagctatgaacttgtaaga 224  Q
    |||||||||| |||||||||||||||||    
T  13271574 ctgcattgaatgctatgaacttgtaaga 13271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 13085911 - 13086122
Alignment:
Q  13 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 112  Q
    ||||||||||| ||||||||||| | || ||| || || || |||| |||||| ||  ||||||||  |||  | |||||||  ||||||||||| || |    
T  13085911 ttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 13086010  T
Q  113 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 212  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||    
T  13086011 gtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctat 13086110  T
Q  213 gaacttgtaaga 224  Q
    ||||||| ||||    
T  13086111 gaacttgcaaga 13086122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 12964180 - 12964052
Alignment:
Q  96 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 195  Q
    ||||||||||||||| | |||| |||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12964180 gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 12964081  T
Q  196 cctgcattgaaagctatgaacttgtaaga 224  Q
    ||||||||||| ||||||||||| |||||    
T  12964080 cctgcattgaatgctatgaacttataaga 12964052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 30368421 - 30368285
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||||||||| || |||| |||||| || |||||||    
T  30368421 gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac 30368322  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaaga 224  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  30368321 ttctaggtcctgtattgaaagctatgaacttgtaaga 30368285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 13100812 - 13101015
Alignment:
Q  20 aaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatgcg 119  Q
    |||||||||||||| ||| || |||||| ||||| ||||||||| ||||  ||| ||||    || | |||| ||||||||||||||||||||||||| |    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  120 aaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 219  Q
    |||||||  |||||||| |||||| ||||| ||||||||||  ||||||||||| || || |||||||||||||| |||| |||||||||||||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg 13101010  T
Q  220 taaga 224  Q
    |||||    
T  13101011 taaga 13101015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 13081253 - 13081039
Alignment:
Q  13 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 112  Q
    ||||||||||||||||||||||  |||| |||||| ||||| |||| ||||||||||  |||||||   ||  |  |||  | |||||||||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacct 13081154  T
Q  113 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 212  Q
    | ||| |||||||  |||| |  | ||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||| || |||||    
T  13081153 gaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctat 13081054  T
Q  213 gaacttgtaagacgg 227  Q
    |||||| ||||||||    
T  13081053 gaacttataagacgg 13081039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 13070489 - 13070353
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | |||||    
T  13070489 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaac 13070390  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaaga 224  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  13070389 ttctcggacctgtattgaaagctatgaacttgtaaga 13070353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 13094278 - 13094414
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || ||||||||||| || ||||||     
T  13094278 gttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaa 13094377  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaaga 224  Q
    |||| || ||||  |||||||||||||||||||||||    
T  13094378 ttctgggtcctgtgttgaaagctatgaacttgtaaga 13094414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 13007009 - 13007215
Alignment:
Q  18 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 117  Q
    |||||||||||||||| ||| ||  ||||| ||||| ||||||||| ||||  ||| ||||    || | |||| |||||||||| ||||||||| ||||    
T  13007009 tcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttatg 13007108  T
Q  118 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 217  Q
     |||||||   ||||||||  ||||| ||||| ||||||||||  ||||||||||| || || ||||||||||||||||||| |||||||||||||||||    
T  13007109 tgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaact 13007208  T
Q  218 tgtaaga 224  Q
    |||||||    
T  13007209 tgtaaga 13007215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 13204268 - 13204474
Alignment:
Q  18 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 117  Q
    |||||||||||||||| ||| ||  |||||||| || | ||||||| ||||  ||| |||| |  |  | |||||||||||||||||||| | || ||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  118 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 217  Q
     |||| |||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | ||||||||||||||||| |||||||||||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact 13204467  T
Q  218 tgtaaga 224  Q
    |||||||    
T  13204468 tgtaaga 13204474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 19279473 - 19279348
Alignment:
Q  96 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 195  Q
    |||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||  ||  |||||||||| || | ||| ||||| |||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga 19279374  T
Q  196 cctgcattgaaagctatgaacttgta 221  Q
    |||||||| || ||||||||||||||    
T  19279373 cctgcattaaacgctatgaacttgta 19279348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 13129707 - 13129843
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13129707 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13129806  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaaga 224  Q
    |||| || ||||  |||||||||| ||||||||||||    
T  13129807 ttctgggtcctgtgttgaaagctacgaacttgtaaga 13129843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 13161400 - 13161536
Alignment:
Q  88 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 187  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13161400 gttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13161499  T
Q  188 ttctaggacctgcattgaaagctatgaacttgtaaga 224  Q
    |||| || ||||  ||||||| |||||||||||||||    
T  13161500 ttctgggtcctgtgttgaaagatatgaacttgtaaga 13161536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 13065600 - 13065387
Alignment:
Q  14 tatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctg 113  Q
    |||||||||||||||||||| ||| |  |||||| ||||| |||||||| |  |||| |||||||   ||  | |||||||| ||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  114 tatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatg 213  Q
    ||||| |||||||||||  | ||  || ||| |||| ||||||| ||| ||| | |||||||| || | ||||||||| || ||||||||||||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatg 13065401  T
Q  214 aacttgtaagacgg 227  Q
    ||||||||||||||    
T  13065400 aacttgtaagacgg 13065387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 13010661 - 13010720
Alignment:
Q  97 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatt 156  Q
    |||||||||||||| ||||||||||| ||||||||||||  |||||| ||||| ||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 31380344 - 31380253
Alignment:
Q  128 ataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 219  Q
    ||||||||||||| |||  ||| || |||||||  || |||| |||||| |||||||||||||  || |||| |||||||| ||||||||||    
T  31380344 ataacaaagaagccgcagacatcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg 31380253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University