View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_477 (Length: 228)

Name: NF6864A_low_477
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_477
NF6864A_low_477
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-222)||(29306-29527)
[»] chr8 (2 HSPs)
chr8 (1-222)||(86562-86783)
chr8 (103-222)||(19803033-19803152)
[»] chr3 (4 HSPs)
chr3 (1-222)||(5383129-5383350)
chr3 (6-222)||(4100151-4100367)
chr3 (1-222)||(13722831-13723052)
chr3 (88-222)||(6806450-6806584)
[»] chr6 (2 HSPs)
chr6 (1-222)||(16777581-16777802)
chr6 (1-222)||(32703927-32704148)
[»] chr1 (6 HSPs)
chr1 (1-222)||(14476687-14476907)
chr1 (1-222)||(42375419-42375640)
chr1 (1-222)||(2796784-2797005)
chr1 (1-222)||(23200444-23200665)
chr1 (146-219)||(21010320-21010393)
chr1 (134-204)||(34427239-34427309)
[»] chr7 (3 HSPs)
chr7 (1-222)||(13160635-13160859)
chr7 (1-153)||(11711465-11711616)
chr7 (143-219)||(34379174-34379250)


Alignment Details
Target: scaffold0015 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29306 - 29527
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29306 ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 29405  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29406 agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 29505  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||||||||||||||||    
29506 aaccttgctctgatgccaatat 29527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 86783 - 86562
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
86783 ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 86684  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
86683 agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 86584  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||||||||||||||||    
86583 aaccttgctctgatgccaatat 86562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 19803152 - 19803033
Alignment:
103 tagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaa 202  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
19803152 tagagtttcgaaggtggcagctatttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcaatcaaactcaactccggacttggaa 19803053  T
203 ccttgctctgatgccaatat 222  Q
    ||||||||||||||||||||    
19803052 ccttgctctgatgccaatat 19803033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5383129 - 5383350
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5383129 ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 5383228  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
5383229 agtagagtttcgaaggtggcagctctttttcttcaagaacagccttagaaaaatcaaactttccgttgattctttcactcaaactcaactccggatttgg 5383328  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||||||||||||||||    
5383329 aaccttgctctgatgccaatat 5383350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 4100367 - 4100151
Alignment:
6 gtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaaagtag 105  Q
    |||||||||| |||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4100367 gtggaggctctgttggtgacaaaaacctccaatccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaaagtag 4100268  T
106 agtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaacct 205  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
4100267 agtttcaaaggtggcagctctttttcttcaacaacacccttagaaaactcaaacttttcgttgattctttcactcaaactcaactccggatttggaacct 4100168  T
206 tgctctgatgccaatat 222  Q
    |||||||||||||||||    
4100167 tgctctgatgccaatat 4100151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13722831 - 13723052
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
13722831 ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggtgttagttttgcgaaaaaatggccgcaa 13722930  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||| ||||||||||||| || ||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
13722931 agtagtgtttcgaaggtggcagttcttttttttccagaacacccttaaaaaactcaaactttccgttgattctttcactcaaactcaacttcggatttgg 13723030  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||||||||||||||||    
13723031 aaccttgctctgatgccaatat 13723052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 6806450 - 6806584
Alignment:
88 aaaatggccgcaaagtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactca 187  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
6806450 aaaatggccgcaaagtagagtttcgaaggtggcagctctttttcttcaagaacaccattagaaaactcaaactttccgttgattctttcactcaaactca 6806549  T
188 actccggatttggaaccttgctctgatgccaatat 222  Q
    |||||||||||||||||||||||| ||||||||||    
6806550 actccggatttggaaccttgctctaatgccaatat 6806584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16777581 - 16777802
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
16777581 ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggctttagttttgcaaaaaaatggccgcaa 16777680  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16777681 agtatagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 16777780  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||| ||||||||||||    
16777781 aaccttgctatgatgccaatat 16777802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32704148 - 32703927
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    ||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
32704148 ggctcgtggaggctccgttggtgacaaaaaccaccggtccaaggtttttcggccttccgaacgcaatggcagcgttagttttgcgaaaaaatggccgcaa 32704049  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32704048 agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 32703949  T
201 aaccttgctctgatgccaatat 222  Q
    |||| |||||||||||||||||    
32703948 aaccgtgctctgatgccaatat 32703927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14476687 - 14476907
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
14476687 ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttaattttgcgaaaa-atggccgcaa 14476785  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14476786 agtagagtttcgatggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 14476885  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||||||||||||||||    
14476886 aaccttgctctgatgccaatat 14476907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42375640 - 42375419
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    ||||||| |||||||||||||||||||||||||  |  |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
42375640 ggctcgtagaggctccgttggtgacaaaaacctccaatccaatgttttttggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 42375541  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42375540 agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 42375441  T
201 aaccttgctctgatgccaatat 222  Q
    |||||| |||||||||||||||    
42375440 aaccttactctgatgccaatat 42375419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2796784 - 2797005
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
2796784 ggctcgtggaggctccgttggtgacaaaaacctccagcccagggtttttcggccttccgaacgcaatggcggcgttatttttacgaaaaaatggctgcaa 2796883  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2796884 agtagagtttcgaaggtggtagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 2796983  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||| | ||| ||||||    
2796984 aaccttgctataatgacaatat 2797005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23200665 - 23200444
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
23200665 ggctcgtggaggcttcgttggtgacaaaaacctcctgtccaaggtttttcggccttccgaatgcaatggcggcgttagttttgcgataaaatggccgcaa 23200566  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
23200565 agtagagtttcgatggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccattgattctttcactcaaactcaactccggatttgg 23200466  T
201 aaccttgctctgatgccaatat 222  Q
    ||||||||||||||||||||||    
23200465 aaccttgctctgatgccaatat 23200444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 21010320 - 21010393
Alignment:
146 tagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaaccttgctctgatgccaa 219  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
21010320 tagaaaacttaaacttttcgctgattctttcactcaaactcaactccggatttggaaccttgctctggtgccaa 21010393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 34427309 - 34427239
Alignment:
134 caagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaacc 204  Q
    |||||||| ||||| |||||| ||| |||| ||| ||||| ||| ||||||||||||||| |||| |||||    
34427309 caagaacatccttaaaaaacttaaattttctgttaattctctcattcaaactcaactccgaattttgaacc 34427239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13160859 - 13160635
Alignment:
1 ggctcgtggaggctcc---gttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccg 97  Q
    ||||||||||||||||   |||||||||||||||||  |  |||||||||||||||||||  |||||||||| ||||||||||| ||| |||||||||||    
13160859 ggctcgtggaggctcctccgttggtgacaaaaacctccaagccaaggtttttcggccttctaaacgcaatggtggcgttagtttggcgtaaaaatggccg 13160760  T
98 caaagtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatt 197  Q
    ||| |||||||||||||||||  | ||||||||||| ||||||||| |||||||||| ||||||||| |||||| || |||||||||||||||||| |||    
13160759 caatgtagagtttcgaaggtgacaactctttttctttaagaacacctttagaaaactgaaactttccattgatttttccactcaaactcaactccgaatt 13160660  T
198 tggaaccttgctctgatgccaatat 222  Q
    |||||||||||| ||||||||||||    
13160659 tggaaccttgctttgatgccaatat 13160635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 11711616 - 11711465
Alignment:
1 ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa 100  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||    
11711616 ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttcagaaagcaatggcggagttagttttgcgaaaaaatgaccgcaa 11711517  T
101 agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaac 153  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
11711516 agtagagtttcgaaggtggcagctctttttcttcaagaa-acccttagaaaac 11711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 34379250 - 34379174
Alignment:
143 ccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaaccttgctctgatgccaa 219  Q
    ||||||||||||||||||||| ||||||||  ||||||||||| ||||  ||||||||||||||||| | |||||||    
34379250 ccttagaaaactcaaactttcagttgattcactcactcaaactgaactttggatttggaaccttgcttttatgccaa 34379174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University