View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_477 (Length: 228)
Name: NF6864A_low_477
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_477 |
 |  |
|
| [»] scaffold0015 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0015 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29306 - 29527
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29306 |
ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
29405 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29406 |
agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
29505 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29506 |
aaccttgctctgatgccaatat |
29527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 86783 - 86562
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86783 |
ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
86684 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86683 |
agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
86584 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
86583 |
aaccttgctctgatgccaatat |
86562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 19803152 - 19803033
Alignment:
| Q |
103 |
tagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaa |
202 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
19803152 |
tagagtttcgaaggtggcagctatttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcaatcaaactcaactccggacttggaa |
19803053 |
T |
 |
| Q |
203 |
ccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19803052 |
ccttgctctgatgccaatat |
19803033 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5383129 - 5383350
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5383129 |
ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
5383228 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5383229 |
agtagagtttcgaaggtggcagctctttttcttcaagaacagccttagaaaaatcaaactttccgttgattctttcactcaaactcaactccggatttgg |
5383328 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5383329 |
aaccttgctctgatgccaatat |
5383350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 4100367 - 4100151
Alignment:
| Q |
6 |
gtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaaagtag |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4100367 |
gtggaggctctgttggtgacaaaaacctccaatccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaaagtag |
4100268 |
T |
 |
| Q |
106 |
agtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaacct |
205 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4100267 |
agtttcaaaggtggcagctctttttcttcaacaacacccttagaaaactcaaacttttcgttgattctttcactcaaactcaactccggatttggaacct |
4100168 |
T |
 |
| Q |
206 |
tgctctgatgccaatat |
222 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4100167 |
tgctctgatgccaatat |
4100151 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13722831 - 13723052
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13722831 |
ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggtgttagttttgcgaaaaaatggccgcaa |
13722930 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||| ||||||||||||| || ||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13722931 |
agtagtgtttcgaaggtggcagttcttttttttccagaacacccttaaaaaactcaaactttccgttgattctttcactcaaactcaacttcggatttgg |
13723030 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
13723031 |
aaccttgctctgatgccaatat |
13723052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 6806450 - 6806584
Alignment:
| Q |
88 |
aaaatggccgcaaagtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactca |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6806450 |
aaaatggccgcaaagtagagtttcgaaggtggcagctctttttcttcaagaacaccattagaaaactcaaactttccgttgattctttcactcaaactca |
6806549 |
T |
 |
| Q |
188 |
actccggatttggaaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
6806550 |
actccggatttggaaccttgctctaatgccaatat |
6806584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16777581 - 16777802
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
16777581 |
ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggctttagttttgcaaaaaaatggccgcaa |
16777680 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16777681 |
agtatagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
16777780 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
16777781 |
aaccttgctatgatgccaatat |
16777802 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32704148 - 32703927
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32704148 |
ggctcgtggaggctccgttggtgacaaaaaccaccggtccaaggtttttcggccttccgaacgcaatggcagcgttagttttgcgaaaaaatggccgcaa |
32704049 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32704048 |
agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
32703949 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
32703948 |
aaccgtgctctgatgccaatat |
32703927 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14476687 - 14476907
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14476687 |
ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttccgaacgcaatggcggcgttaattttgcgaaaa-atggccgcaa |
14476785 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14476786 |
agtagagtttcgatggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
14476885 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14476886 |
aaccttgctctgatgccaatat |
14476907 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42375640 - 42375419
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42375640 |
ggctcgtagaggctccgttggtgacaaaaacctccaatccaatgttttttggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
42375541 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42375540 |
agtagagtttcgaaggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
42375441 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
42375440 |
aaccttactctgatgccaatat |
42375419 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2796784 - 2797005
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
2796784 |
ggctcgtggaggctccgttggtgacaaaaacctccagcccagggtttttcggccttccgaacgcaatggcggcgttatttttacgaaaaaatggctgcaa |
2796883 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2796884 |
agtagagtttcgaaggtggtagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
2796983 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
||||||||| | ||| |||||| |
|
|
| T |
2796984 |
aaccttgctataatgacaatat |
2797005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23200665 - 23200444
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23200665 |
ggctcgtggaggcttcgttggtgacaaaaacctcctgtccaaggtttttcggccttccgaatgcaatggcggcgttagttttgcgataaaatggccgcaa |
23200566 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttgg |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23200565 |
agtagagtttcgatggtggcagctctttttcttcaagaacacccttagaaaactcaaactttccattgattctttcactcaaactcaactccggatttgg |
23200466 |
T |
 |
| Q |
201 |
aaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23200465 |
aaccttgctctgatgccaatat |
23200444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 21010320 - 21010393
Alignment:
| Q |
146 |
tagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaaccttgctctgatgccaa |
219 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21010320 |
tagaaaacttaaacttttcgctgattctttcactcaaactcaactccggatttggaaccttgctctggtgccaa |
21010393 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 34427309 - 34427239
Alignment:
| Q |
134 |
caagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaacc |
204 |
Q |
| |
|
|||||||| ||||| |||||| ||| |||| ||| ||||| ||| ||||||||||||||| |||| ||||| |
|
|
| T |
34427309 |
caagaacatccttaaaaaacttaaattttctgttaattctctcattcaaactcaactccgaattttgaacc |
34427239 |
T |
 |
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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13160859 - 13160635
Alignment:
| Q |
1 |
ggctcgtggaggctcc---gttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccg |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
13160859 |
ggctcgtggaggctcctccgttggtgacaaaaacctccaagccaaggtttttcggccttctaaacgcaatggtggcgttagtttggcgtaaaaatggccg |
13160760 |
T |
 |
| Q |
98 |
caaagtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatt |
197 |
Q |
| |
|
||| ||||||||||||||||| | ||||||||||| ||||||||| |||||||||| ||||||||| |||||| || |||||||||||||||||| ||| |
|
|
| T |
13160759 |
caatgtagagtttcgaaggtgacaactctttttctttaagaacacctttagaaaactgaaactttccattgatttttccactcaaactcaactccgaatt |
13160660 |
T |
 |
| Q |
198 |
tggaaccttgctctgatgccaatat |
222 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
13160659 |
tggaaccttgctttgatgccaatat |
13160635 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 11711616 - 11711465
Alignment:
| Q |
1 |
ggctcgtggaggctccgttggtgacaaaaacctatagcccaaggtttttcggccttccgaacgcaatggcggcgttagttttgcgaaaaaatggccgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
11711616 |
ggctcgtggaggctccgttggtgacaaaaacctccagtccaaggtttttcggccttcagaaagcaatggcggagttagttttgcgaaaaaatgaccgcaa |
11711517 |
T |
 |
| Q |
101 |
agtagagtttcgaaggtggaagctctttttcttcaagaacacccttagaaaac |
153 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
11711516 |
agtagagtttcgaaggtggcagctctttttcttcaagaa-acccttagaaaac |
11711465 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 34379250 - 34379174
Alignment:
| Q |
143 |
ccttagaaaactcaaactttccgttgattctttcactcaaactcaactccggatttggaaccttgctctgatgccaa |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||| | ||||||| |
|
|
| T |
34379250 |
ccttagaaaactcaaactttcagttgattcactcactcaaactgaactttggatttggaaccttgcttttatgccaa |
34379174 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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