View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_478 (Length: 228)
Name: NF6864A_low_478
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_478 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5739504 - 5739725
Alignment:
| Q |
1 |
gtttttgtttccatctttgtgtnnnnnnnctagctttacttaactattcataattatttcttttttctaacaatggcagctgccagagaaactaccacac |
100 |
Q |
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| T |
5739504 |
gtttttgtttccatctttgtgtaaaaaaactagctttacttaactattcataattatttcttttttctaacaatggcagctgccagagaaactaccacac |
5739603 |
T |
|
| Q |
101 |
tttccaaaatcaagaggcttcatcaacaaaaacaacaaatacagaggcttcctccttgatgaaaatggaggcagatttgtaaattgaatagccattctcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5739604 |
tttccaaaatcaagaggcttcatcaacaaaaacaacaaatacagaggcttcctccttgatgaaaatggaggcagatttgtaaattgaatagccattctcg |
5739703 |
T |
|
| Q |
201 |
gctgattgatgttggtgttact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5739704 |
gctgattgatgttggtgttact |
5739725 |
T |
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