View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_48 (Length: 396)
Name: NF6864A_low_48
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_48 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 149698 - 149871
Alignment:
| Q |
13 |
catcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttt |
112 |
Q |
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| T |
149698 |
catcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttt |
149797 |
T |
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| Q |
113 |
tgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
186 |
Q |
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| T |
149798 |
tgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
149871 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 149988 - 150062
Alignment:
| Q |
303 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaaggaaat |
377 |
Q |
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| T |
149988 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaaggaaat |
150062 |
T |
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