View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_49 (Length: 395)
Name: NF6864A_low_49
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_49 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 36481644 - 36481348
Alignment:
| Q |
1 |
tgtttgatcagcattactatcaaaatattatctttgaattttattgtcttttgaaattggaatcaaatcaaaattcagcaattaaattaacaatctttta |
100 |
Q |
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| T |
36481644 |
tgtttgatcagcattactatcaaaatattatctttgaattttattgtcttttgaaattggaatcaaatcaaaattcagcaattaaattaacaatctttta |
36481545 |
T |
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| Q |
101 |
tgcagaacttaatagtcnnnnnnnnnagggaagattaatagtcatataattgtaataatcccactcaaaatttagcaatcaaaattcaattgtagccgct |
200 |
Q |
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| T |
36481544 |
tgcagaacttaatagtc-ttttttttagggaaaattaatagtcatataattgtaataatcccac--------------tcaaaattcaattgtagccgct |
36481460 |
T |
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| Q |
201 |
ctgaataaacctatttttagagataatatcctacatccaatatcacatgtttatcctccatcaaaattcagcaatcaaattaaaccnnnnnnnngacaaa |
300 |
Q |
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| T |
36481459 |
ctgaataaacctatttttagagataatatcctacatccaatatcacatgtttatcctccatcaaaattcagcaatcaaattaaaccttttttttgacaaa |
36481360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 309 - 395
Target Start/End: Complemental strand, 36481231 - 36481145
Alignment:
| Q |
309 |
tatactcttcattagttcattatattttacatgtgtgttgcaattgctttatctattttctatcacagtgacactgaattctcctaa |
395 |
Q |
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| T |
36481231 |
tatactcttcattagttcattatattttacatgtgtgttgcaattgctttatctattttctatcacagtgacactgaattctcctaa |
36481145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 9349 - 9383
Alignment:
| Q |
249 |
gtttatcctccatcaaaattcagcaatcaaattaa |
283 |
Q |
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| T |
9349 |
gtttatcctccatcaaaattcaacaatcaaattaa |
9383 |
T |
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