View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_490 (Length: 227)
Name: NF6864A_low_490
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_490 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 37498042 - 37497871
Alignment:
| Q |
21 |
actacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagtcaagatttctagatatacatttagagataaattttgctt |
120 |
Q |
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| T |
37498042 |
actacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagtcaagatttctagatatacatttgaagataaattttgctt |
37497943 |
T |
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| Q |
121 |
gattatttcgttctttatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattct |
192 |
Q |
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| T |
37497942 |
gattatttcattctttttgtattcattttcaagtttttgtactatttatatttgaaggtgaaatgaaattct |
37497871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 37497855 - 37497789
Alignment:
| Q |
144 |
cattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcattattcat |
210 |
Q |
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| T |
37497855 |
cattctcaagtccttgtactatttatagttgaaggtgaaatgaaattctctactattcattactcat |
37497789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 31321833 - 31321667
Alignment:
| Q |
37 |
ttgtattaatacaccaatattactttc-tgttcttaattttatagtcaagatttctagatatacatttagagataaattttgcttgattatttcgttctt |
135 |
Q |
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| T |
31321833 |
ttgtattaatacatcaatattacttttatgttcttaattttatagtcaagatttc-atatatacatttgaagtccatttctgcttcattatt-cattctt |
31321736 |
T |
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| Q |
136 |
tatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcatt |
204 |
Q |
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| T |
31321735 |
tatatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattctttacaattcatt |
31321667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 31321673 - 31321607
Alignment:
| Q |
141 |
attcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcattatt |
207 |
Q |
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| T |
31321673 |
attcattctcaagtccttgtactatctgtagttgaaggtgaaatgacattctctactattcattatt |
31321607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 42601864 - 42601699
Alignment:
| Q |
35 |
atttgtattaatacaccaatattactttctgttcttaattttatagtcaag-----atttctagatatacatttagagataaattttgcttgattatttc |
129 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||| || ||||| ||||| | |||||| |
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| T |
42601864 |
atttgtattaatacatcaatatt---ttctgttcttaattttatagtcaagtcaagatttccagatatacatttgaagtcaaattctgcttcactatttc |
42601768 |
T |
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| Q |
130 |
gttctttatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattctctactattcatt |
204 |
Q |
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|| |||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||| ||||||| |
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| T |
42601767 |
attttttatgtattcattatcaagtcgttgtactat------ttgaaggtgaaatgaaattcattacaattcatt |
42601699 |
T |
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