View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_494 (Length: 225)
Name: NF6864A_low_494
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_494 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 12843682 - 12843893
Alignment:
| Q |
1 |
aaatcaagccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacattt |
100 |
Q |
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| T |
12843682 |
aaatcaagccaattcctcacaattacatttatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacattt |
12843781 |
T |
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| Q |
101 |
gcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgac |
200 |
Q |
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| T |
12843782 |
gcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaagttgcagagactaac |
12843881 |
T |
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| Q |
201 |
cggaatcatatc |
212 |
Q |
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| T |
12843882 |
cggaatcatatc |
12843893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 12861787 - 12861581
Alignment:
| Q |
13 |
ttcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcgatgat |
112 |
Q |
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|||||||||||| ||| ||||||| |||||||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
12861787 |
ttcctcacaatttcatccatcgataaacgtgaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatttgcaagcgatgat |
12861688 |
T |
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| Q |
113 |
caaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatc |
212 |
Q |
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| T |
12861687 |
caaatctctccagcttcctacgatctgcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatc |
12861588 |
T |
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| Q |
213 |
tgcgcga |
219 |
Q |
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| T |
12861587 |
tgcgcga |
12861581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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