View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_501 (Length: 223)
Name: NF6864A_low_501
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_501 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 42041701 - 42041523
Alignment:
| Q |
24 |
agaacaaactgtttcttccccgatgcatcattcggaacaatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaag |
123 |
Q |
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| T |
42041701 |
agaacaaactgtttcttccccgatgcatcattcggaactatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaag |
42041602 |
T |
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| Q |
124 |
tttccttcttcttataagcttcttgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggat |
202 |
Q |
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| T |
42041601 |
tttccttcttcttataagcttcttgaagaattttctgaactccacttcttccacctttgaaaggtgaattatatcggat |
42041523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 51725880 - 51726026
Alignment:
| Q |
47 |
tgcatcattcggaacaatacaagcttgcagctccgccaattcatcggagcctcttcgaacccgaatcattatcgaagtttccttcttcttataagcttct |
146 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||| |||| || ||| | ||||||||||||||||| |||||||||| | | |||| |
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| T |
51725880 |
tgcatcattcagaacagtacaagcttgcagctccgccaattcatcggatcctcgtcaaactcaaatcattatcgaagttttcttcttcttacacgtttct |
51725979 |
T |
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| Q |
147 |
tgaagaattttctgaactccacttcttccacctttgaaaggtgaatt |
193 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
51725980 |
tgaagaattttctgaacgccactttttccacctttgaaaggtgaatt |
51726026 |
T |
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