View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_503 (Length: 223)

Name: NF6864A_low_503
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_503
NF6864A_low_503
[»] chr3 (7 HSPs)
chr3 (153-205)||(5696460-5696512)
chr3 (144-194)||(5670783-5670833)
chr3 (144-194)||(5680276-5680326)
chr3 (19-65)||(5795767-5795813)
chr3 (144-194)||(5694428-5694478)
chr3 (144-185)||(5736864-5736905)
chr3 (144-185)||(5773976-5774017)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 5696512 - 5696460
Alignment:
Q  153 attatttctccacctcttcttgcaacaagaatctttgtaaagtcttgattctt 205  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  5696512 attatttctccgcctcttcttgcaacaagaatctttgtaaagtcttgactctt 5696460  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 5670833 - 5670783
Alignment:
Q  144 atctactttattatttctccacctcttcttgcaacaagaatctttgtaaag 194  Q
    |||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  5670833 atctactttattatttctcctcctcttcttgcaacaataatcattgtaaag 5670783  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 5680326 - 5680276
Alignment:
Q  144 atctactttattatttctccacctcttcttgcaacaagaatctttgtaaag 194  Q
    |||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  5680326 atctactttattatttctcctcctcttcttgcaacaataatcattgtaaag 5680276  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 5795813 - 5795767
Alignment:
Q  19 cttatattagtcaccaaaggttatactattgtatgttttcttataag 65  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  5795813 cttatattagtcaccaaaggttatattattgtatgtttgcttataag 5795767  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 5694478 - 5694428
Alignment:
Q  144 atctactttattatttctccacctcttcttgcaacaagaatctttgtaaag 194  Q
    |||||||| ||||||||||| |||||||||||||||| |||| ||||||||    
T  5694478 atctacttgattatttctcctcctcttcttgcaacaataatcattgtaaag 5694428  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 5736905 - 5736864
Alignment:
Q  144 atctactttattatttctccacctcttcttgcaacaagaatc 185  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  5736905 atctactttattatttctcctccttttcttgcaacaagaatc 5736864  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 5774017 - 5773976
Alignment:
Q  144 atctactttattatttctccacctcttcttgcaacaagaatc 185  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  5774017 atctactttattatttctcctccttttcttgcaacaagaatc 5773976  T

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