View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_512 (Length: 221)
Name: NF6864A_low_512
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_512 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 8349172 - 8349389
Alignment:
| Q |
5 |
gggagaatgaaaatgagtaataatgttgaatatgcacgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtctacccg |
104 |
Q |
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| T |
8349172 |
gggagaatgaaaatgagtaataatgttgaatatgcacgaagatatatccatggtgtggcagatggaaatgcattcagcgactacaatcgatgtctaccca |
8349271 |
T |
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| Q |
105 |
aagctggaaag-ataactcatccaattattatgttataaaatttgagggtacttataactcaattcatgtgatttccaatatttttccaatgttggatta |
203 |
Q |
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| T |
8349272 |
aagctggaaagaataactcatccaattattatgttataaaatttgagggtacttatagctcaattcatgtgatttccaatatttttccaatgttggatta |
8349371 |
T |
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| Q |
204 |
gattctaagatgacaaag |
221 |
Q |
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| T |
8349372 |
gatactaagatgacaaag |
8349389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 8483082 - 8482900
Alignment:
| Q |
40 |
acgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtctacccgaagctggaaaga-taactcatccaattattatgtt |
138 |
Q |
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| T |
8483082 |
acgaagatatgtccatggtgtggcagagagagatgcattcaccgactccaatcgatgtctacccggagctggaaagaataactcattcaattattatgtt |
8482983 |
T |
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| Q |
139 |
ataaaatttgagggtacttataactcaattcatgtgatttccaatatttttccaatgttggattagattctaagatgacaaag |
221 |
Q |
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| T |
8482982 |
ctaaaatttgagggtacttataactcaatttatgtgatttccaatatgtttccaatgttggattagattctaagatgacaaag |
8482900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 8355254 - 8355442
Alignment:
| Q |
39 |
cacgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtctacccgaagctggaaag-ataactcatccaattattatgt |
137 |
Q |
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| T |
8355254 |
cacgaagatatgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataacttatccaattattatgt |
8355353 |
T |
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| Q |
138 |
tataaaatttgagggt--------acttataactcaattcatgtgatttccaatatttttccaatgttggattagattctaagatgacaaag |
221 |
Q |
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| T |
8355354 |
tctaaaatttgagggtttcgattaacttat---tcaatttatgtgatttccaatatgtttccaatgttggattagattctaagatgacaaag |
8355442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 8531790 - 8531843
Alignment:
| Q |
157 |
tataactcaattcatgtgatttccaatatttttccaatgttggattagattcta |
210 |
Q |
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| T |
8531790 |
tataactcaattcctaagatttctagtatttttccaatgttggattagattcta |
8531843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 8351801 - 8351865
Alignment:
| Q |
157 |
tataactcaattcatgtgatttccaatatttttccaatgttggattagattctaagatgacaaag |
221 |
Q |
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| T |
8351801 |
tataactcaattcctgtaatttctattatttttacaatgttggattagattatatgacgacaaag |
8351865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 8356967 - 8357020
Alignment:
| Q |
157 |
tataactcaattcatgtgatttccaatatttttccaatgttggattagattcta |
210 |
Q |
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| T |
8356967 |
tataactcaattcctgtaatttctagtatttttacaatgttgaattagattcta |
8357020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 1169626 - 1169525
Alignment:
| Q |
13 |
gaaaatgagtaataatgttgaatatgcacgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtctacccgaagctgga |
112 |
Q |
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| T |
1169626 |
gaaaatgaataacaatgctgaatatacacgaagatatgtccagggtgtggcagatggagatgcattcagccgctccaatcgatctctagccaaagcttga |
1169527 |
T |
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| Q |
113 |
aa |
114 |
Q |
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|| |
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| T |
1169526 |
aa |
1169525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 7287292 - 7287239
Alignment:
| Q |
157 |
tataactcaattcatgtgatttccaatatttttccaatgttggattagattcta |
210 |
Q |
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| T |
7287292 |
tataactcaattcctttgatttctactatttttacaatcttggattagattcta |
7287239 |
T |
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