View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_518 (Length: 220)
Name: NF6864A_low_518
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_518 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 11421189 - 11421144
Alignment:
| Q |
51 |
tttattagctaaataagcctcggccaagtaagtgaatgtattacaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11421189 |
tttattagctaaataagcctcggccaagtaagtgaatgtattacaa |
11421144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 11421049 - 11421001
Alignment:
| Q |
166 |
cgtgtatgaaaggctctttagtaaactttaattttcccacgatcttgttg |
215 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||| |||||||||| |
|
|
| T |
11421049 |
cgtgtataaaaggctctttagtaaac-ttcattttcccatgatcttgttg |
11421001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University