View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_519 (Length: 220)
Name: NF6864A_low_519
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_519 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3451992 - 3451778
Alignment:
| Q |
1 |
aacttgacgatgcaatgactgaacataatttataatttcatcaagcataagtgcttttccagtaacctacaaggaataattaataattcataggcatagc |
100 |
Q |
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| T |
3451992 |
aacttgacgctgcaatgactgaacataatttataatttcatcaagcataagtgcttttccagtaacctacaaggaataattaataattcataggcatagc |
3451893 |
T |
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| Q |
101 |
ccaattagtgaaaaagtacaaattttagtaacatgaaattaaaccaatttgttttgtattctgatttagtaacttttgaaagttttgcttaccttattgc |
200 |
Q |
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| T |
3451892 |
ccaattagtgaaaaagtacaaattttagtaacatgaaattaaaccaatttgttttgtattctgatttagtaacttttgaaagttttgcttaccttattgc |
3451793 |
T |
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| Q |
201 |
aacctggtacaagat |
215 |
Q |
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| T |
3451792 |
aacctggtacaagat |
3451778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18810856 - 18810777
Alignment:
| Q |
1 |
aacttgacgatgcaatgactgaacataatttataatttcatcaagcataagtgcttttccagtaacctacaaggaataat |
80 |
Q |
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||||||||| |||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
18810856 |
aacttgacgctgcaatgattgcacatagtttataatttcatcaagcatgagtgcttttccagtgacctagaaggaataat |
18810777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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