View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_521 (Length: 219)
Name: NF6864A_low_521
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_521 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1426062 - 1425844
Alignment:
| Q |
1 |
atcatcaaagccatggatgggtgtttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcatgttgaaagaannnnnnnatcgaa |
100 |
Q |
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| T |
1426062 |
atcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcacgttgaaagaatttttttatcgaa |
1425963 |
T |
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| Q |
101 |
catcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagatta |
200 |
Q |
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| T |
1425962 |
catcaataaagctgatgatgtttggtggtaaacaaccagcaaaaacataaattaagcatagtagatatgaggacgttgtgttggatgtatagtaagatta |
1425863 |
T |
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| Q |
201 |
gacgggatagaattagagc |
219 |
Q |
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| T |
1425862 |
gacggaatagaattagagc |
1425844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 1448137 - 1447934
Alignment:
| Q |
17 |
atgggtgtttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttca--tgttgaaagaannnnnnnatcgaacatcaataaagctg |
114 |
Q |
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| T |
1448137 |
atgggtggttgaaatggaggaatgcctcgtgtgttttatgtgatgcgaaagtactactcacgtgttgaaataaattttt-atcgaacatcaataaaactg |
1448039 |
T |
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| Q |
115 |
atgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaatt |
214 |
Q |
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| T |
1448038 |
atgatgtttggtggtaaacaaccaacacaaacataaattaagcataatagatatgaagaagttgtgttggatgtgtagtaagactagaggggataaaatt |
1447939 |
T |
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| Q |
215 |
agagc |
219 |
Q |
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| T |
1447938 |
agagc |
1447934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 1470512 - 1470464
Alignment:
| Q |
117 |
gatgtttggtggtaaacaatcagcacaaacataaattaagcatagtaga |
165 |
Q |
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| T |
1470512 |
gatgtttggtggtaagcaaccaacacaaacataaattaagcatagtaga |
1470464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 52442909 - 52442825
Alignment:
| Q |
119 |
tgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagac |
203 |
Q |
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| T |
52442909 |
tgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagac |
52442825 |
T |
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