View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_522 (Length: 218)
Name: NF6864A_low_522
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_522 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 54608454 - 54608254
Alignment:
| Q |
18 |
atgaaccaatgacaatatgttgnnnnnnnctaattgtaaagcctgcttcttatcttatctactttatatatgtatatgagcctgcagattaataattggg |
117 |
Q |
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| T |
54608454 |
atgaaccaatgacaatatgttgaaaaaaactaattgtaaagcctgcttcttatcttatctactttatatatgtatatgagcctgcagattaataattggg |
54608355 |
T |
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| Q |
118 |
tgatggagatatggcatatacggtgaagaagagcagcagatccaatatatgtatgggaaattctagttcttgcaggatcatcctaatataataaataaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54608354 |
tgatggagatatggcatatacggtgaagaagagcagcagatccaatatatgtatgggaaattctagttcttgcaggatcatcctaatataataaataaat |
54608255 |
T |
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| Q |
218 |
a |
218 |
Q |
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| T |
54608254 |
a |
54608254 |
T |
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